Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03150 ATGTCAATGCCGATGAACTATCTGGAGAAGCTGTCAGAAACTGGAAAAACGTATGTTCCTGTGGAGTTGGCTTTGCATGTCGCTAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCAAGGCACATAATTCATCGTGACATAAAAAGTGAAAATATTCTGCTTGATTTGGATAGGAAGAGAGACAATGGAGCTCCCACTGTAAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGCATGTTGTATTGCTCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACACCTAGGTGGATGGCTCCAGAGGTTATGCGGACTATGTACGAAAAAAAGTCTTATGGATTGGTATGA 372 0.4274 MSMPMNYLEKLSETGKTYVPVELALHVAKDVSCALSELHSRHIIHRDIKSENILLDLDRKRDNGAPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKKSYGLV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03150 123 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 6 122 - -
Vimu3g03150 123 Pfam Protein kinase domain 8 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03150 123 SUPERFAMILY Protein kinase-like (PK-like) 13 114 IPR011009 -
Vimu3g03150 123 Gene3D Transferase(Phosphotransferase) domain 1 6 120 - -
Vimu3g03150 123 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03150 123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03150 Vimu-Chr3 45305225 45309520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03150 34 116 MAP Kinase Kinase Kinase AT2G30040 42.857 8.19e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vimu3g03150 Pkinase 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03150 - - gmx:100819959 223.787