Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03149 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACCTTGTGATCAAACCTCATTTGCAGAATCCCATGAATCCAGCCAAGAAGACAACCAAAGCTGCCCAAAATGGCAAAGGTCCACCGCCACCAGAAATCGATAGCCAAGCTTTGCCTCACTCAAAGAACAAGGGAAGAAGAAGGGGGAGAGGTGGCAGAAAACCCGATCAAGGAGATGTTATGATGAGGCCTAGATGCAGACCATGCACTGCAACACTTACAAGTAGTGCAAATGGGAATGTTGAAAATGATTTAATCTCTGATATGGGTTTTCCCACTTCAAGCAAGTCTTTGAGCTTTGCTCGTAGGCCTGGATATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTGCTATTACCCCAGAAGTGTCTTCTAAAACAGTGAACAGGTCTATCATAGCAGAACTAGTGAGGCTCTATAAAGAGTCTGACCTGGGGATGAGACTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCAGCTTCCCTTTGCTTGGAGAGAGTTTAAGATTAAGCTTGTAGATGAAGAGGAAGGAGTCAATGGCCCCAAAAGGGAAAGAGAGTACAGGGTGGTGATCAAATTTGTTGCTCGGGCAAACTTGCACCACTTGGGCCAGTTCCTAGCTGGTAAGCGTGCTGATGCACCCCAGGAGGCACTTCAAATCCTGGACATTGTACTAAGAGAGCTGGCAACTAAGAGGTATTGCCCAATTGGAAGGTCCTTCTTTTCACCTGATATTAGAACACCGCAACGGCTTGGAGAGGGGTTAGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGACTCTCCCTCAATATTGTAGTGGAATTTGTTGGGCAGCTATTAGGGAAAGACGTGATGTCAAGGCCATTGTCAGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTAAAAGTTGAAGTAACACATAGAGGGAGTGTGAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTCGTGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGCTTCACTATTCAATATACTCACCTTCCTTGCCTCCAAGTGGGAAACCAGAAGAAGGCCAACTATTTGCCTATGGAGGCTTGCAAAATTGTTGAGGGGCAACGCTATACAAAAAGATTGAACGAGAAGCAAATTACTGCTCTGTTGAAAGTTACTTGCCAGAGACCTCGCGATCGTGAAAATGACATTTTACGGACCATTCAACATAATGCTTATGATCAAGATCCGTATGCAAAAGAATTTGGAATTAAAATCAGTGAAAAGCTAGCTTCAGTTGAAGCGAGAATTCTTCCAGCCCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGGAGTGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATATACAATGCCAAGCCTGAACAGGTAGAGAAAGCTTTGAAACATGTTTACCATGTTTCTGCGAGCAAAACTAAAGGAAAGGAATTGGAGCTATTGTTAGCAATATTGCCAGACAATAACGGTTCACTCTATGGTGATCTGAAGCGAATTTGTGAAACTGATCTCGGGCTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAAATCACTAAACAGTACTTAGCTAATGTGTCTCTGAAGATCAATGTGAAGTGGCCACTTACCCTCCTCCGGGTGCAGATGGGCGGTAGAAATACTGTACTTCTTGATGCTGTGAGCTGCAGAATACCATTGGTCAGTGACATACCAACCATTATTTTCGGAGCAGATGTAACCCACCCTGAAAACGGCGAAGACTCAAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAGGACTGGCCTGAAGTAACAAAATACGCTGGTCTAGTGTGCGCTCAAGCTCATCGGCAGGAACTCATACAAGACTTGTACAAAACTTGGCACGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGAGATTTACTTGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCGCTACGAATTATATTTTACAGGTTGAAGCTTACCTCTGTTGAATTGGTTTGTTGGTACTTGCCATTAATTTTTATTAGAGTTACATTAAACATCGAGTTGCTGTTAGATGGAATGTTTTCTGAACTCATTCCTTCGGCCAATTTTGCTCCACCTGTCCACATAAATTCTGTTATGTCTACTAGAGGGATAATGGACGGCGTCAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGGCATGTGCTTCCTTAGAACCAAATTACCAGCCTCCAGTAACTTTCATAGTCGTGCAAAAAAGGCATCATACTCGGCTATTCGCAAACAACCACAGGGACAGAAGCAGCACTGATAGGAGTGGGAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGCCATCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCAAGGTGTACACGCTCAGTATCTGTTGTTCCCCCAGCATATTATGCGCATTTAGCAGCCTTTCGAGCCCGTTTCTACATGGAACCAGATATGCAAGAGAATGGTTCTACAGGTGAGGGTAATGGTCATGGTTCCAAAGGAACACGAGCAGCTGGAGATTATAGTGTGAAGCCATTGCCAGACCTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAG 3087 0.4331 MPVRQMKESSEQHLVIKPHLQNPMNPAKKTTKAAQNGKGPPPPEIDSQALPHSKNKGRRRGRGGRKPDQGDVMMRPRCRPCTATLTSSANGNVENDLISDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVAITPEVSSKTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLVDEEEGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELATKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIVVEFVGQLLGKDVMSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSASKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKWPLTLLRVQMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRLKLTSVELVCWYLPLIFIRVTLNIELLLDGMFSELIPSANFAPPVHINSVMSTRGIMDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGEGNGHGSKGTRAAGDYSVKPLPDLKENVKRVMFYC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03149 1028 Gene3D paz domain 308 425 - -
Vimu3g03149 1028 MobiDBLite consensus disorder prediction 987 1011 - -
Vimu3g03149 1028 SMART Piwi_a_2 596 983 IPR003165 GO:0003676
Vimu3g03149 1028 SUPERFAMILY Ribonuclease H-like 588 774 IPR012337 -
Vimu3g03149 1028 Gene3D - 486 667 - -
Vimu3g03149 1028 FunFam Argonaute 10 486 668 - -
Vimu3g03149 1028 FunFam Protein argonaute-2 305 427 - -
Vimu3g03149 1028 Gene3D - 674 1028 IPR036397 GO:0003676
Vimu3g03149 1028 Pfam PAZ domain 334 438 IPR003100 GO:0005515
Vimu3g03149 1028 Pfam Argonaute linker 2 domain 448 494 IPR032472 -
Vimu3g03149 1028 CDD Piwi_ago-like 466 982 IPR045246 -
Vimu3g03149 1028 MobiDBLite consensus disorder prediction 1 76 - -
Vimu3g03149 1028 CDD PAZ_argonaute_like 310 421 - -
Vimu3g03149 1028 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 104 774 - -
Vimu3g03149 1028 Pfam Piwi domain 832 982 IPR003165 GO:0003676
Vimu3g03149 1028 Pfam Piwi domain 597 774 IPR003165 GO:0003676
Vimu3g03149 1028 Pfam Mid domain of argonaute 505 582 IPR032473 -
Vimu3g03149 1028 ProSiteProfiles PAZ domain profile. 308 422 IPR003100 GO:0005515
Vimu3g03149 1028 Pfam N-terminal domain of argonaute 124 258 IPR032474 -
Vimu3g03149 1028 SMART DUF1785_2 267 316 IPR014811 -
Vimu3g03149 1028 SUPERFAMILY Ribonuclease H-like 832 984 IPR012337 -
Vimu3g03149 1028 SMART PAZ_2_a_3 312 444 IPR003100 GO:0005515
Vimu3g03149 1028 ProSiteProfiles Piwi domain profile. 596 983 IPR003165 GO:0003676
Vimu3g03149 1028 Pfam Argonaute linker 1 domain 268 309 IPR014811 -
Vimu3g03149 1028 SUPERFAMILY PAZ domain 310 462 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03149 Vimu-Chr3 45286157 45293065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03149 1 1028 Eukaryotic Initiation Factors Gene Family AT5G43810 74.203 0.0 1572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03149 K11593 - zju:107423077 1658.66