Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03141 ATGGTTGCTGCGCTGCTTGTTACTGATTCAGGATTGGTGGAGGAAACTGACACGATATCACAGAAAAATGCATTATTAAAACAACTTCTTGGTCTCCTTGGATGTATTATTATTGACATCCCTGTGATTTTTAACAAGTTTTCTTTGCTTGCGCACTTGCATCAATTTCACCATGTACAAATGAGAAAAACCACTCAGTTGATTAGTGCTGGAGAGTGTGACGCCCGGGCACTGACGAGGGCGGGGAGTGAGCGGCTCCTGGCAGGCTTTGAGTGGAAGGGGCACATGGATGAATCGAACATACACCGGAATGAGAGGGATCTGGAGACTCCTGAAGTAATTCTGGGATGGGTGACCTTCCGGGAACACACTGGAAAGTCTTGTGGTGATGTGTGGGGGCAGTCAACAGTCCCTATGGTATCAGAGCCTAGCCTCTCCCAGTACGGTATGGTTCGAGGACGAAGGGATCTGGAGACTGTTAGAAGTAACAGGTGTGATAGTAAAAGTGAGTGGATGAGGCATTACAAAAATTTGAAAGTAAAGACAAAAACCTCGGAGGCGCAGGGAGAAATCCCTCAACTCATAAAACCTAGGCCCAGCCTAATGCAAAAACACGAGCCCAGTCCAAAAACACGCTTGCCACGCGTCACGGACATCACGAACCACTACACCAGACGAGCATCTTCTTCTTCGCCACCACCACGCACACGACTGCAACGAAGACCCGTTTCAGTTGGCATCGCCTCTGATTTTTCCATTCCCAGCAGCTCCACCATTTCTTTCTTTCAGAGCAAAAACATGTTAAAACAGGTTCGTCTTCTTCTGCTCTTCTTGGCCTCTGGATTGACCCTCTCCGTTTCAGAGTCCCAATCTGTTTCTCTTCTGCCTCATGCTGCTGACTCCTTCAATGTCAGCTATATCCAGCTGAAGAACGCGGCGACTTGTTCTTACTTGGTGGTTATATCTACTAGTTGTTCGTCTCCTAGGTATACAAGAGATCAGATCAGTCTTGCTTTTGGGGATGCTTATGGAAATCAGATATGTTATGTATACCTATATAGACACGGATTAGATGGTTGGAGGCCTGAAAGTGTGAAAATCAATAGTTATAATGGCAGGGCTGTTACTTTCTATTACAACACATATATCCCCGGTGATACTTGGTATGGATTTGATTTGTGCAGCGGTGCTTCTTCTTCGAACCAGGTATCCAAGCAGAAATGGCTTATATTTATGGTTCTAGGATTTGTTCTGAGTTTTTGGTCTAGGTCTGATTATCATTTTGCTTCTTTCTGCTCTACTGACTGTGACTCTGAAAGGGGTGTACGAGGATGCAGAGTGTTGACACCTTCTGATATGAGCCACAACCCCATTCAAGCAGGAGAAAATCTCTCTCTTTCTCTCTCTCCTTCTCTTTGTCCTTACGCCGCCATCACCATGCCTTCAGTCTCTCTCTCTGCCACTGACACCACCCTCCAAGAAACCAAGAAGCTAAGCGCCAAGAAAGCCAAGAACCAATCCCCAACCATTGCAGAGAAGAAGAGTGCCTCCAAACTTCTTTCTGATCCCAACACCCCCGATCCCGACCAAGATGGGGTCTCGGGGAAGCTCCAGAAGAAGGCGAAGAAGCGTAAGGCTTCAGACATAGAGGCTATGGCGGCGACCAACGATGCCGACGAAGACACTAGCTCCGAGCTGGTGGAGCCCGAATCTTCTAGGGAAGACGATCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAGGAACAGCCTTTGGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATTCGGTCTCCAAATTCAGGATATCTGAACCGTTGAGGCTGAAATTGAAGGAGAAGGGGATCGAATCCTTGTTTCCTATTCAGGCCATGACTTTCGATTTAGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGCTACCCATATTGGAGTCTTTAATAAATGGTCCGACTAAGTCTTCTAGAAAGACGGGCTACGGGAGAACTCCAAGCGTTCTTGTGCTTCTACCAACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGAGCGATGGGATTGAGTTCTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATCAAGCTCAGGAGAGGTGTTGATATTGTAATTGGCACACCAGGTCGTGTAAAGGATCATATCGAGAGGGGAAATATAGACCTGAGCCAACTAAAATTCCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAGTTGATTCTAGGTATCTCTTTTTCCCCGATGAATGGACCACCGGTGTTGCTAAGTGCCAATTATTGTGTCAAATATGTTAAGATTGTGTCTATTGCTGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGACATATTGTTCTCCCTTGTTCTGCTCCAGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCTAGAGCTCTCCATGGTGACATACAACAAGCACAACGTGAGGTTACTCTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAGTCCTATATCCATCGTTCTGGACGAACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTACCCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCTGGTGTAAAATTTGAGCACATATCTGCCCCACGGCCTGATGATATTGCTAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCCGACAGTGTGATTCCTGCGTTCAAAGAAACCGCAGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTGCTTGCAAAGGCTCTCGCAAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTGCTTCTTGAGATTGGGAAACCAATCTTCACTCCTTCTTTTGCCTATGGAATCCTGAGGAGATTTTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGATTTAAATACATATCTTAGTGGTCAGGAAAATGCTGCTAATGTAAGTCTAGAGGTATTGAAAGCTTTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGCAGATTTGGTTTGGAAGAGGCGGGGGAGGCAGAAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGAAACTGGGGTGGAAAAAGATGGTGAGTTTTCTCACTCTGCACTGTCTGGTAGCATTACTGCATAG 3597 0.4534 MVAALLVTDSGLVEETDTISQKNALLKQLLGLLGCIIIDIPVIFNKFSLLAHLHQFHHVQMRKTTQLISAGECDARALTRAGSERLLAGFEWKGHMDESNIHRNERDLETPEVILGWVTFREHTGKSCGDVWGQSTVPMVSEPSLSQYGMVRGRRDLETVRSNRCDSKSEWMRHYKNLKVKTKTSEAQGEIPQLIKPRPSLMQKHEPSPKTRLPRVTDITNHYTRRASSSSPPPRTRLQRRPVSVGIASDFSIPSSSTISFFQSKNMLKQVRLLLLFLASGLTLSVSESQSVSLLPHAADSFNVSYIQLKNAATCSYLVVISTSCSSPRYTRDQISLAFGDAYGNQICYVYLYRHGLDGWRPESVKINSYNGRAVTFYYNTYIPGDTWYGFDLCSGASSSNQVSKQKWLIFMVLGFVLSFWSRSDYHFASFCSTDCDSERGVRGCRVLTPSDMSHNPIQAGENLSLSLSPSLCPYAAITMPSVSLSATDTTLQETKKLSAKKAKNQSPTIAEKKSASKLLSDPNTPDPDQDGVSGKLQKKAKKRKASDIEAMAATNDADEDTSSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNSVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGISFSPMNGPPVLLSANYCVKYVKIVSIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLNTYLSGQENAANVSLEVLKALPRLQQRDQSRGGRFGLEEAGEAETVDFQMIGFPMVVEEVVVETGVEKDGEFSHSALSGSITA 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03141 1198 SMART ultradead3 627 842 IPR014001 -
Vimu3g03141 1198 MobiDBLite consensus disorder prediction 533 550 - -
Vimu3g03141 1198 MobiDBLite consensus disorder prediction 496 611 - -
Vimu3g03141 1198 Pfam DEAD/DEAH box helicase 632 786 IPR011545 GO:0003676|GO:0005524
Vimu3g03141 1198 CDD DEADc 623 801 - -
Vimu3g03141 1198 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 765 773 IPR000629 -
Vimu3g03141 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 853 995 IPR001650 -
Vimu3g03141 1198 SMART helicmild6 879 956 IPR001650 -
Vimu3g03141 1198 Gene3D - 553 819 IPR027417 -
Vimu3g03141 1198 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 568 1024 - -
Vimu3g03141 1198 Gene3D - 1063 1134 - -
Vimu3g03141 1198 MobiDBLite consensus disorder prediction 587 611 - -
Vimu3g03141 1198 Pfam GUCT (NUC152) domain 1045 1140 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vimu3g03141 1198 CDD GUCT_RH7_like 1052 1137 - -
Vimu3g03141 1198 Gene3D - 846 1062 IPR027417 -
Vimu3g03141 1198 MobiDBLite consensus disorder prediction 502 528 - -
Vimu3g03141 1198 Pfam Embryo-specific protein 3, (ATS3) 345 394 IPR010417 -
Vimu3g03141 1198 Pfam Helicase conserved C-terminal domain 858 956 IPR001650 -
Vimu3g03141 1198 FunFam DEAD-box ATP-dependent RNA helicase 7 1062 1134 - -
Vimu3g03141 1198 SUPERFAMILY RNA-binding domain, RBD 1049 1132 IPR035979 GO:0003676
Vimu3g03141 1198 CDD SF2_C_DEAD 839 965 - -
Vimu3g03141 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 968 IPR027417 -
Vimu3g03141 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 639 821 IPR014001 -
Vimu3g03141 1198 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 314 391 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03141 Vimu-Chr3 45169988 45187588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03141 609 964 Eukaryotic Initiation Factors Gene Family AT3G19760 29.167 1.54e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03141 K16911 - gmx:100820207 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03141 3 45169988 45187588 Vimu3g03141 3 45169988 45187588 ECH
Vimu8g01929 8 24919245 24920580 Vimu3g03141 3 45169988 45187588 PCT