Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03133 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGCCCTCCAACCGCAACACAAAATCTCTAAAGATCTCATCCTGGATGATCACAACACCGATAATTCTCCCCTTGTCGCTTATTCAGATAAAAAAGTGCCTACTAGCCGCCCCAACCAACTCTTTTATGCGCCTGAAACCAGTCACGCTATTTCTGCAGAAGAAGAATACGCAAAAAAGATGGTTCACAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGACAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCCCTTCATCAGGGGAAAGAGGTCGATGTCTGATCAAATGAACGAGGCGGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAATTGAGTGAAAAGAGGGATAAGCTGAAGAAGAAAGTTGCCATAAATTCCAGCCTCGAAAGCCGTGAGAACAAGCATGAATCATGTGGTTTTACTGTCCGCCAAAATAGTAGTGGAGCTGTGGGAATTGAAATCAGTGGATTGAGTGAGGAAGGGGTTTCACTTTCTAAACTGTTGGAACTGTTGTTGGAAGAGGGACTTGAAGTTGTTTGTTGTCTTTCAACTAAAGTCGATGGCAGACTACTCCACAGTTTGCAGTGTGAGGTTGTCAATTCCGACACTGTAGATCTATCTGAGCTGAGAAGAAAATTCTCCAATGTAGTTCCATCATTTAGAGTTTCTGAATAA 738 0.4268 MFPLQRGNELVIQFSNALQPQHKISKDLILDDHNTDNSPLVAYSDKKVPTSRPNQLFYAPETSHAISAEEEYAKKMVHREIERQRRQEMTTLHASLRSLLPLPFIRGKRSMSDQMNEAVNYINHLQKNIKELSEKRDKLKKKVAINSSLESRENKHESCGFTVRQNSSGAVGIEISGLSEEGVSLSKLLELLLEEGLEVVCCLSTKVDGRLLHSLQCEVVNSDTVDLSELRRKFSNVVPSFRVSE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03133 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
Vimu3g03133 245 Gene3D - 64 158 IPR036638 GO:0046983
Vimu3g03133 245 SMART finulus 79 131 IPR011598 GO:0046983
Vimu3g03133 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Vimu3g03133 245 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Vimu3g03133 245 CDD bHLH_AtORG2_like 74 150 - -
Vimu3g03133 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 70 237 - -
Vimu3g03133 245 FunFam Transcription factor bHLH126 65 153 - -
Vimu3g03133 245 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03133 Vimu-Chr3 45104861 45105831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03133 74 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.665 1.87e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g03133 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03133 - - pvu:PHAVU_007G064300g 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03133 3 45104861 45105831 Vimu3g03133 3 45104861 45105831 ECH
Vimu8g01938 8 25030089 25031517 Vimu3g03133 3 45104861 45105831 PCT