Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03132 ATGGCAGAAAATCAGATCTTCTATGATCCTGTGCTCGATGCTAGTGCTCCCATTCCCTGTACAGCTCAAATGGGCACTACCAAGGGCGAGCAGAGAGGAAAGTTACCAGCTTGGACAAAGGAAGATTATAAGACCACCACAATGGATGAAAACAAGAGGTGGATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCGACTTTAGATCTCTTCTGCCTCTTCAATATATCAAGGGAAAACGCTCAATTTCTGATCACATGCATGAGGGTGCAAATTACATCAAACACCTTGAAAATAAAGTGAAAGAGTTGCAAGCTAAGAGAGACGAGTTTAAGAAGTTGTGCAATTTGAGTCCTGTTGTTGTTTCTAATAGTGGAAGCTTTAGCACTACCGATCTTCCAATATGTGTCATTGTTCATCCTTTTCCGGGAGGTATTCAGATTAAGTGTAGTTACAGCTTCAGAAAATATGTTCCACATACGATGACTGGGACTAATTACACTGAATTGCAAAAGAAGCTTGTCCAAGCGATATCATCTTCATGTACAAATGTTATATTATCTGCACAAAATTTCCATTTTTTTTGTCTGAATATTTACATGAGGAAAACTATTTTTTCATACACAGTAGAATTCTTTTATAATAATATACATCTGAGTTAA 681 0.3774 MAENQIFYDPVLDASAPIPCTAQMGTTKGEQRGKLPAWTKEDYKTTTMDENKRWMHRETEKQRRQEMTRLCTDFRSLLPLQYIKGKRSISDHMHEGANYIKHLENKVKELQAKRDEFKKLCNLSPVVVSNSGSFSTTDLPICVIVHPFPGGIQIKCSYSFRKYVPHTMTGTNYTELQKKLVQAISSSCTNVILSAQNFHFFCLNIYMRKTIFSYTVEFFYNNIHLS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03132 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 128 IPR036638 GO:0046983
Vimu3g03132 226 Pfam Helix-loop-helix DNA-binding domain 52 104 IPR011598 GO:0046983
Vimu3g03132 226 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 49 165 - -
Vimu3g03132 226 Gene3D - 42 124 IPR036638 GO:0046983
Vimu3g03132 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 103 IPR011598 GO:0046983
Vimu3g03132 226 FunFam Transcription factor bHLH126 43 131 - -
Vimu3g03132 226 Coils Coil 93 120 - -
Vimu3g03132 226 CDD bHLH_AtORG2_like 52 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03132 Vimu-Chr3 45082571 45086272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03132 46 134 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 51.685 2.82e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g03132 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03132 - - gmx:100803786 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03132 3 45082571 45086272 Vimu3g03132 3 45082571 45086272 ECH
Vimu8g01939 8 25049682 25050779 Vimu3g03132 3 45082571 45086272 PCT