Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03131 ATGAATGGAACTTTGCAGATCGCAGTGAAGCGGTTGAAGATGATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTACTAGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGTGAAGAAAGGTTAATTGTCTATGATTACATGCCTAATCACAGTTTGCTCAATCATTTGCATGGTCAACTTGCCAAAGATTGTTTGTTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTGGGACGATTTGATTTAGAGCAGTTGAAATCTGTAATCATGATAGCTATAAGGTGCACAGAAAGTAATCCAGAAAAAAGGCCTAGCATGGTAGAGGTGGTGGAGTGGCTCAAGGGTGGCATTGGAAGGAGAAAAAAAGAGATTCCAAATTTAATTCACACTAATGGAGATGATAATTATGAAGAAAACTATGGAGAGATTAGAATAACACAGTCCAAGTTGAAAATACCAAGTCATGATGATAAACTTAGAATAAGATAA 537 0.3966 MNGTLQIAVKRLKMMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMPNHSLLNHLHGQLAKDCLLDWPRRMSIAIGAAEGLGRFDLEQLKSVIMIAIRCTESNPEKRPSMVEVVEWLKGGIGRRKKEIPNLIHTNGDDNYEENYGEIRITQSKLKIPSHDDKLRIR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03131 178 PANTHER OS01G0253100 PROTEIN 97 135 - -
Vimu3g03131 178 SMART tyrkin_6 1 129 IPR020635 GO:0004713|GO:0006468
Vimu3g03131 178 SUPERFAMILY Protein kinase-like (PK-like) 5 93 IPR011009 -
Vimu3g03131 178 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03131 178 Pfam Protein tyrosine and serine/threonine kinase 4 93 IPR001245 GO:0004672|GO:0006468
Vimu3g03131 178 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03131 Vimu-Chr3 45075663 45077356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03131 6 94 Receptor kinase-like Gene Family AT1G68400 50.549 1.34e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vimu3g03131 PK_Tyr_Ser-Thr 2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03131 - - gmx:100815397 172.17