Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03130 ATGACACTGCACACAGTGGTTAGTGCGGTCTCAGTGTATCTGATTCTCATCCATGCATCAATGGTTGCTAACTCAGCCATGGATCCCTACAAAGCCCTCAACATCATCCTCAACCCAAACGGCACCCTCACACGCTTAAGCATTTCGCCGCAAAGCCCTCCCTCGCCAGATCCCTCGCTCCCCACACCGGTTCTCTCCAAAGACCTCCCCATCAACAAATTCAACCACACCTGGGCGCGGATCTACCTACCCCACAAAGCACTCCATCATTCCCCCAACCCCAAACTACCCCTCATCGTCTTCTACCATGGCGGAGGCTTCATCTTCGAAAGTGCAGCCTCCACTTACTTCCACGACTTCTGCGTCAGAATGGCCCACACCACGCAATCCGTCGTGGTTTCCGTCGACTACCGCCTCGCCCCGGAGCACCGCCTCCCCGCCGCCTACGAAGACTCCGTGGAGGCGCTGCACTGGATCAAAGCCTCCAACGACGACTGGTTGCGCCACGCCGATTACTCCCGCTGCTATCTGATGGGGGAGAGTGCCGGGGGGAACATTGCCTACACGGCGGGTCTACGTGCGGCGGCGGAGGTTGGCAAATTAAAACCGCTGAAGATTGCAGGGTTGATATTGATTCAACCGTTTTTTGGTGGGAAGAAGAGGAGTCCATCAGAGATAAGGCTTGCCGAAGACAACACTATACCTTTGGCTATCACAGATCTGATGTGGAATCTGTCACTGCCCGTTGGCGTTGACCGTGATTACCCATATTCAAATCCAACTATCAACGGTGGAGATAAGATTTTGGATGAGATTAAGGTTCTTGGGTGGAAGGTTGCGGTATTTGGATGTGAAGGGGACCCACTGGTGGCCCGCGAGAGAGAGCTGGTGAAATTGCTTGAGCATAAGGGTGTGCACGTGGAGAGAAGGAGAATGTTTGTGTCTGGGCAAGTGGATCCCTTCCACCATCTCAAAATCCTCCCAAACTCAGATGGCACCATCACTCGCCTCCGTGCAGACCCACTCACCCATCCAACTTTCGATGCCACCCTACCCATCCCCGTTCTCACCCAAGACACAACCATCAACCAATCAAACAAAACCTTCGCCCGCATATTCCTCCCACGTCCACCACTCCATAATTCCTCCACCAACCTCCCTATCATCGTTTACTTCCACGGCGGCGGCTTCGTCCTCTTCAGCGCCGCCACACACTTCTTCCACGACGCCTGCGTAAACCTCGCAAAAGACACCAATTCCATCGTCGTTTCCGTCGACTACCGTCTCGCCCCCGAACACCGACTTCCCGCTGCCTACGACGACGCCGTCGAAGCGCTCCACTGGCTCAAATCCAAGCCACACCATTGGTTGAGAAACCACGCCGATTATTCCAACTGTTACCTCATGGGAAGTAGCGCCGGAGCAAACATCGCATACCACGCGGCTCTACGTGTGGCGGCCGAAACTAACTCTGATGGGATTAATTACCTGGAGCCTCTTAAGATCCGAGGGCTGATATTGAGTCAACCGTTTTTCGGGGCCACAGAGAGGGTTCCTTCTGAGGTGAGGCTTGCGGAGGATCCGGTTTTGGCGCCCCACGTGTGTGACGTGCTGTGGGAGCTGTCGTTGCCCGTTGGGGTTGACCGCGAGCACGAGTATTGCAATCCTCGTGGTTGCGATGGCGGCGTGATTTTGGAGAGGGTGAGGGAGCTGGGGTGGCGCGTGTTGGTGAGTGGGTGCCACGAGGACCCTCTGGTCGACCATCAGATTGGTCTGGCCACACTGGTGGCGGAGAAGGGCGTTCCCGTTCTGACGAGCTTTAACCCAACGGGATCTCATGGGGCTGAAGTTCGTGATCCTCTCCACCAAAACCGGCTCCATCACCTCGTTAAACATTTCATTGCTCCTCCTCCTCCCTCTATCCACAATTTATCATCTCAAAACTCTGCTTAA 1953 0.5504 MTLHTVVSAVSVYLILIHASMVANSAMDPYKALNIILNPNGTLTRLSISPQSPPSPDPSLPTPVLSKDLPINKFNHTWARIYLPHKALHHSPNPKLPLIVFYHGGGFIFESAASTYFHDFCVRMAHTTQSVVVSVDYRLAPEHRLPAAYEDSVEALHWIKASNDDWLRHADYSRCYLMGESAGGNIAYTAGLRAAAEVGKLKPLKIAGLILIQPFFGGKKRSPSEIRLAEDNTIPLAITDLMWNLSLPVGVDRDYPYSNPTINGGDKILDEIKVLGWKVAVFGCEGDPLVARERELVKLLEHKGVHVERRRMFVSGQVDPFHHLKILPNSDGTITRLRADPLTHPTFDATLPIPVLTQDTTINQSNKTFARIFLPRPPLHNSSTNLPIIVYFHGGGFVLFSAATHFFHDACVNLAKDTNSIVVSVDYRLAPEHRLPAAYDDAVEALHWLKSKPHHWLRNHADYSNCYLMGSSAGANIAYHAALRVAAETNSDGINYLEPLKIRGLILSQPFFGATERVPSEVRLAEDPVLAPHVCDVLWELSLPVGVDREHEYCNPRGCDGGVILERVRELGWRVLVSGCHEDPLVDHQIGLATLVAEKGVPVLTSFNPTGSHGAEVRDPLHQNRLHHLVKHFIAPPPPSIHNLSSQNSA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03130 650 SUPERFAMILY alpha/beta-Hydrolases 41 310 IPR029058 -
Vimu3g03130 650 Gene3D alpha/beta hydrolase 30 321 IPR029058 -
Vimu3g03130 650 Gene3D alpha/beta hydrolase 322 636 IPR029058 -
Vimu3g03130 650 PANTHER ARYLACETAMIDE DEACETYLASE 36 324 - -
Vimu3g03130 650 Pfam alpha/beta hydrolase fold 99 310 IPR013094 GO:0016787
Vimu3g03130 650 Pfam alpha/beta hydrolase fold 389 614 IPR013094 GO:0016787
Vimu3g03130 650 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 389 405 IPR002168 GO:0016787
Vimu3g03130 650 SUPERFAMILY alpha/beta-Hydrolases 345 620 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03130 Vimu-Chr3 45070434 45073764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03130 331 556 Carbohydrate Esterase AT1G68620 38.865 4.53e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03130 - - pvu:PHAVU_007G064700g 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03130 3 45070434 45073764 Vimu3g03130 3 45070434 45073764 ECH
Vimu3g03130 3 45070434 45073764 Vimu8g01942 8 25116281 25118345 PCT