Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03124 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTGACCTTTTCAAAGCGCAGAAACGGTTTGCTAAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCGACATGTCTCAGACTGCTGATGAAGTTGAAAATCAATCAGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTAAAGTATGAATCACTCCAACGAACTCAAAGGAATCTTCAGGGAGAAGAACTTGAGCCACTCAGCATGAAAGAACTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGTGCAACCTGGAGCAGATTAACAGACATTTGGAGTCAAAGAACATAGGTAAATGCACTCATTGTGAAGATAATACTAATCAGTTTGAAGCTGCAACGTCGTTGCGGCCTCAGCAGGAGCAAATTACTTCAAAGGGAAAAGAAATAGACACG 624 0.4295 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQTADEVENQSEQCLYQELLVLRVKYESLQRTQRNLQGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVCNLEQINRHLESKNIGKCTHCEDNTNQFEAATSLRPQQEQITSKGKEIDT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03124 208 Coils Coil 125 145 - -
Vimu3g03124 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu3g03124 208 FunFam MADS-box transcription factor 1 13 84 - -
Vimu3g03124 208 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Vimu3g03124 208 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu3g03124 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Vimu3g03124 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu3g03124 208 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vimu3g03124 208 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03124 Vimu-Chr3 45008603 45014911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03124 1 168 MADS-box Gene Family AT1G24260 53.143 3.94e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu3g03124 K-box 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03124 K09264 - gmx:100802197 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03124 3 45008603 45014911 Vimu3g03124 3 45008603 45014911 ECH
Vimu3g03124 3 45008603 45014911 Vimu8g01945 8 25191247 25203766 PCT