Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03120 ATGGGCAAGGAGTGGCATTGGGGTGGAAGGTCCTCCAAGAGGGGTGGAGAAGCTCAAACAGAAATCCCTTCTGGTTGCATGTGTGCAGTCTTTCAGGCTTTCGATTTTCATCCATTTCACTTTTCCATTAACCACCAGCCATCCTCTTTCAAGTCTCGCACTCGAGAAGACCACACTCTCTCTAAAGGAGCTGAAGGACCAAGGCATAGCTTGGAGTCAGAAGATGGTACTACAGTGTCATCAATCTCAAAAGAAGAAAATTTTAAAATACCAAAGAACATTCAGATCAGAACAAGAGGGAGCACAAGATCAAAAACAGAAATTAGCGATCTTTCGTCAGAAATCAGTGTCTCTCCAGGGACCAAGACACCGACTTTGGTTGCAAGGTTAATGGGTCTGGATCTTCTTCCTGATGCACATTCCCCTTCTTCCCCATGCCTTTCCACTCCAAACCGTTATAGACCACGACAACATATCAAAATAATCAAACATAGAAACAGCACGGGAAGTGACTTCTTGCCTGAGATTCCCAAAATGTCCTCAGCAAGAAAATCGGATGTTGAGCATAGACTCTCTCTCCAAATCAACAAGGAGAACACAGATTCGTATGAGGATTTTGAGGTTCCTCTGTTTTCTTTTACAAAGAGAAGATATGATGAGAACAATAGCAGGAGTCCAAGTCGCTATGCCAAGCAAATTGTCAAACAGGTTAGAGAAAGTGTGAGCAGAAAGGTTGGACGCGAAATCACCAACACTATCAAAAACAGAGACCATGAAGTAGAGGAATGTGTAAGCAAAATCAAATTCAAGAAAACTTCAAAAACTTCAGTGAATGAATCCTGCCCTGGAAAACTTTCAAACTCATCTTATTCCCCTAGGCTCAGCAGATTTATTGAATCCAAACAAAAATCAAGCACAACACCATCGCCAACAACTCCAAAAAATCAAAGCACACACTCAGTGCTAAAACCACAATCACCTCCACATGCGACCAACATTGAAACTGAGCTTTCAGAAGTTTCTACAAAGCCAAAGCCTCAAGCATTGGCCAAGAAAGAGTTGCAGAACCAAAAAGCAGTCACAAAATACAAGAAAACAACCTTTGGAAAGTCGAGTAGGAGAGTCAATAAGCCTCCGCAAACATCAATTAGAAATCAGCAAGAAGAGCCATTTATTATTCGTTACCCATTAGTCACTAAAGTCAATGACATCAAAACCAAAAAGAAGAGAACTCTTCCACTTTCAAGCGATCTTTTTAATAGTCACAACACGGTTCCAAAGCTTCTCCCTGTCAAGATAGGTCTTTCTCCTCAAAAACAGACACGGGTGAGTGATGACGATGAATGTCGAGATGCAAAACGCAACACACAGTTATTTAGATGTTCGCGCCAGACGTACAGAGAAGAAGCGCCACCACCACCCGCACCCCGAGGACCAACAACCTGCGATCACGACAAATCTCACGGCGCCTTCACCACCATCTCCTCCGCCGCACTCCACGAAGGACCAGAGTTTCACTACGTCACGATCATCTTGGCCCGTACCACTGGGTCCCACAGCAACGCAACCACGCATATACCCCACCTCCATTTTCAGTGGTTCTCTCCCACCCACCCCTTGGACCCTTCACTCTTTCACAGTCTGGAGCGCTACCCAACATCCCATTCCTTTGTCTCTTTTCCAGAAGACAACAAAGATTGCGTATTTGAGCGGAAACATGGGCTGGGTCCGCGCTGCAACCGTAGATTGCTGTTCGATTTGGTGGACGAGTTGCTGTCGGAGATTCTAGTTAAGCCGAAGCGTTTCAGAGGGAGGCTGCTGGAGACAGTGTGGGAGAGGGTTCGGAGTTTACCACGTGCGAAGTGCGAGGTTTTGGAGGACATTGATGGGTTGGTAGAGATTGTGGAGATGAGGGAAGAAGAGGAAGAAGAAGGGTTGGTGAAGGAGATAGAAGGGAACATAGTGGAGTGGTTGGTGCATGAAACGTTAACCGTTATGGTTGGTGGCGTAGATATGTAA 2019 0.4532 MGKEWHWGGRSSKRGGEAQTEIPSGCMCAVFQAFDFHPFHFSINHQPSSFKSRTREDHTLSKGAEGPRHSLESEDGTTVSSISKEENFKIPKNIQIRTRGSTRSKTEISDLSSEISVSPGTKTPTLVARLMGLDLLPDAHSPSSPCLSTPNRYRPRQHIKIIKHRNSTGSDFLPEIPKMSSARKSDVEHRLSLQINKENTDSYEDFEVPLFSFTKRRYDENNSRSPSRYAKQIVKQVRESVSRKVGREITNTIKNRDHEVEECVSKIKFKKTSKTSVNESCPGKLSNSSYSPRLSRFIESKQKSSTTPSPTTPKNQSTHSVLKPQSPPHATNIETELSEVSTKPKPQALAKKELQNQKAVTKYKKTTFGKSSRRVNKPPQTSIRNQQEEPFIIRYPLVTKVNDIKTKKKRTLPLSSDLFNSHNTVPKLLPVKIGLSPQKQTRVSDDDECRDAKRNTQLFRCSRQTYREEAPPPPAPRGPTTCDHDKSHGAFTTISSAALHEGPEFHYVTIILARTTGSHSNATTHIPHLHFQWFSPTHPLDPSLFHSLERYPTSHSFVSFPEDNKDCVFERKHGLGPRCNRRLLFDLVDELLSEILVKPKRFRGRLLETVWERVRSLPRAKCEVLEDIDGLVEIVEMREEEEEEGLVKEIEGNIVEWLVHETLTVMVGGVDM 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03120 672 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 50 72 - -
Vimu3g03120 672 Pfam Domain of unknown function (DUF4378) 504 661 IPR025486 -
Vimu3g03120 672 Pfam DUF761-associated sequence motif 112 141 IPR032795 -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 299 358 - -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 299 342 - -
Vimu3g03120 672 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 668 - -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 46 82 - -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 98 117 - -
Vimu3g03120 672 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03120 Vimu-Chr3 44927336 44931010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03120 94 664 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 32.057 1.09e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03120 - - vun:114190841 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03120 3 44927336 44931010 Vimu3g03120 3 44927336 44931010 ECH
Vimu8g01948 8 25231215 25234343 Vimu3g03120 3 44927336 44931010 PCT