Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03117 ATGGTGAGGGGAAAGGTTCAAATGAAGAAAATTGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAATGGTCTTCTAAAGAAAGCTTACGAGCTATCTGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCTCCCAGAATGGAAGGCTTTATGAGTTCTCAAGTTCTGACATGTCAAAGATTTTGGAACGATACCGTGAATATACCAAGGATGTTACTACCAATAAGTTTGGAGATGATTATATCCAGCAGCAACTGAAGTTAGAATCCGCAAACATGGCAGAGAAGATTCAGCTTCTTGAAATATCTAAAAGTTCTTGCCTGAAATGTGCTGCACTAGCGTCTGCAGTTCTTGGTTCGTCATTTGAAATTGAATTAATTGTGAGTTGTTGTTCCTATGATGAACTCAAAGAAATCGAGGATCAGCTGCAGAGAAGTTTGCTAAGAGTCAGACAAAGAAAGGCTCAACTATACATGGAGCAGATTGATCAACTACGATGCCAGGAGAGTAACTTGCTCCTAGAGAATGCCAAATTAACTGAAATGGTTGTCGTCACCCATTATCGTCGTCATGTTGGTGGTTTGTTTAAGGGATGTTCTTATGTTACCTTCTTGCTGCTAGCGGGTAAGATTCTGGTGTTTCGCTTCACGCTGCCTCCTCTTTCTACTTTGCCGCCACCGCGTACATTCACTTCTCCCATTAGTCTCAAACTAAATGAAGATAACTTCTTGGTTTGGAAACACCAAGCTTTGGCCACCGTTACGGGTCTGCATCTTATGAAATTTCTTGAGAGTTCTTCATACCCTCCCAAATATGTCACTCTTGATGCAGCTGCATCAGATACTGTCAACCCCCTTTACCTCCATCACCTTCAACAGGATTAA 897 0.4181 MVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSSSDMSKILERYREYTKDVTTNKFGDDYIQQQLKLESANMAEKIQLLEISKSSCLKCAALASAVLGSSFEIELIVSCCSYDELKEIEDQLQRSLLRVRQRKAQLYMEQIDQLRCQESNLLLENAKLTEMVVVTHYRRHVGGLFKGCSYVTFLLLAGKILVFRFTLPPLSTLPPPRTFTSPISLKLNEDNFLVWKHQALATVTGLHLMKFLESSSYPPKYVTLDAAASDTVNPLYLHHLQQD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03117 298 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vimu3g03117 298 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 Coils Coil 137 160 - -
Vimu3g03117 298 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Vimu3g03117 298 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vimu3g03117 298 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Vimu3g03117 298 ProSiteProfiles K-box domain profile. 87 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu3g03117 298 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vimu3g03117 298 Pfam K-box region 133 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu3g03117 298 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu3g03117 298 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03117 Vimu-Chr3 44907164 44913649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03117 1 161 MADS-box Gene Family AT5G62165 58.385 7.97e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu3g03117 K-box 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03117 - - gmx:100800580 238.424