Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03114 ATGGGTTTCAGTCACATTTTTTTTTGGGTGTTTTTAAAAATTTGGAATTTCTTCAGGATGGAATCCAATCCCACCCATAACGGGGATGATACCTCGGAGAAGCTGTCACTGCCAATGGTGGACCAGCCGGAGTCGTCGTCACCCTCTCCGTCTTCCCCGCAGGCGCTACAAATGAAAGAAGAGGCCATGGACGCGGAGCAAGGCGTTGACATGTCCCTTCCCGTGAACGTTATTTCGATGCCTCTGACGGTGGCGAAGAGGCCCTCGAAGGACCGACACACGAAGGTGGAGGGGCGTGGCCGCAGAATCCGGATGCCGGCTACATGCGCCGCCAGGATCTTCCAGCTGACGCGCGAGCTGGGGCACAAGTCGGACGGAGAAACAATCCGATGGCTTCTGGAGCACGCTGAGCCCGCTATAATCGAGGCCACCGGAACCGGCACCGTTCCGGCGATCGCGGTGTCTGTCGGCGGTACTCTGAAGATTCCGACATCCTCGGCGGCGAGGCCCGACGGGGAAGACAACCCGAAGAAACGAAGGAGGAGAGCGTCGAACAGCGAATTCATCGACGTGAACGAAAACCACGTTTCGGTGTCTTCAGGACTTGCACCAATCGCTCAAACCGCATATGGCGGTGTTGCCAGTGGCGGTGGTGGTGGAGTAGTTCCAGTTTGGAACGGTAACGGTTCAGGGCCTTTCTTCATGTTCCCAAACTCTTCAAACCCGCCTCAGTATTGGGCCATTCCCGCAACGGCGGCCCCATTTTTTAACGTGCAGGCCCGGCCCATTTCGGGATTTGTTTCTGCCTTACAGATGCACGAACAGGATAAGCACTCCTCAAATGGTGGTGCCTCGGATTGTGTGAACTCTTCGTCCACTATGGGTTCTAGTATGAGCTCAGTGAGTGTTACTACCAGCGCCGCCGCTTCCTCCTCATCCGCCGCCACAACCACTCAAATTCTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAGCTTCAATTTTTGGGTGAAGCGCCACCTTCTTCAAAGCCTTGA 1041 0.5485 MGFSHIFFWVFLKIWNFFRMESNPTHNGDDTSEKLSLPMVDQPESSSPSPSSPQALQMKEEAMDAEQGVDMSLPVNVISMPLTVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVSVGGTLKIPTSSAARPDGEDNPKKRRRRASNSEFIDVNENHVSVSSGLAPIAQTAYGGVASGGGGGVVPVWNGNGSGPFFMFPNSSNPPQYWAIPATAAPFFNVQARPISGFVSALQMHEQDKHSSNGGASDCVNSSSTMGSSMSSVSVTTSAAASSSSAATTTQILRDFSLEIYDKKELQFLGEAPPSSKP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03114 346 MobiDBLite consensus disorder prediction 162 187 - -
Vimu3g03114 346 MobiDBLite consensus disorder prediction 26 66 - -
Vimu3g03114 346 Pfam TCP family transcription factor 89 172 IPR017887 -
Vimu3g03114 346 ProSiteProfiles TCP domain profile. 89 143 IPR017887 -
Vimu3g03114 346 MobiDBLite consensus disorder prediction 26 56 - -
Vimu3g03114 346 MobiDBLite consensus disorder prediction 171 187 - -
Vimu3g03114 346 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 49 332 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03114 Vimu-Chr3 44892122 44894112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03114 20 337 TCP Transcription Factor Family AT5G51910 50.150 4.98e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu3g03114 TCP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03114 - - gmx:100819475 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03114 3 44892122 44894112 Vimu3g03114 3 44892122 44894112 ECH