Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03106 CCGGCGCTGTCGGACGAGGAGGTGTTTCTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTTCCGCGGCGTCAGGCAGAGGGACTCCGGTAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGACTAGGATTTGGCTGGGGACCTTTCCTACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCTGCGCTGGCGCTTAGGGGAAGGTCGGCCTGTCTCAATTTCGCCGACTCCGCGAATCGGTTGCCGGTGCCGGCGACGGCTGATCCCCGGGACATTCAGAAGGCGGCGGCAGAGGCTGCAGAGGCGTTTCGGCCCGGTAACGAATCGGGAAAGGATGATGATGCGGTGGTGGAGACCGTGGCGACAGCGAGGGAGAATGTTGAAGAAAAAGAGATGGAGGATCTGAGGAACATGGTGCTGATGTCGCCAACCCATTGCTTCGAGAGTGGTGAATATGGAAGTACGGAAATGGAATTTGAAGACATTGAAGTTTCGTTGTGGAGTTATTCACTCTAA 555 0.6 PALSDEEVFLAASHPKKRAGRKKFRETRHPVFRGVRQRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSANRLPVPATADPRDIQKAAAEAAEAFRPGNESGKDDDAVVETVATARENVEEKEMEDLRNMVLMSPTHCFESGEYGSTEMEFEDIEVSLWSYSL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03106 184 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Vimu3g03106 184 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g03106 184 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Vimu3g03106 184 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 182 IPR045277 GO:0003700
Vimu3g03106 184 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Vimu3g03106 184 FunFam Ethylene-responsive transcription factor 2 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03106 Vimu-Chr3 44843694 44854033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03106 10 117 AP2-EREBP Transcription Factor Family AT5G51990 83.333 2.15e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g03106 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03106 - K09286 pvu:PHAVU_007G066500g 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01968 8 25462345 25463007 Vimu3g03106 3 44843694 44854033 ECH
Vimu3g03106 3 44843694 44854033 Vimu3g03106 3 44843694 44854033 ECH
Vimu8g01968 8 25462345 25463007 Vimu3g03106 3 44843694 44854033 PCT