LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g03106	CCGGCGCTGTCGGACGAGGAGGTGTTTCTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTTCCGCGGCGTCAGGCAGAGGGACTCCGGTAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGACTAGGATTTGGCTGGGGACCTTTCCTACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCTGCGCTGGCGCTTAGGGGAAGGTCGGCCTGTCTCAATTTCGCCGACTCCGCGAATCGGTTGCCGGTGCCGGCGACGGCTGATCCCCGGGACATTCAGAAGGCGGCGGCAGAGGCTGCAGAGGCGTTTCGGCCCGGTAACGAATCGGGAAAGGATGATGATGCGGTGGTGGAGACCGTGGCGACAGCGAGGGAGAATGTTGAAGAAAAAGAGATGGAGGATCTGAGGAACATGGTGCTGATGTCGCCAACCCATTGCTTCGAGAGTGGTGAATATGGAAGTACGGAAATGGAATTTGAAGACATTGAAGTTTCGTTGTGGAGTTATTCACTCTAA	555	0.6	PALSDEEVFLAASHPKKRAGRKKFRETRHPVFRGVRQRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSANRLPVPATADPRDIQKAAAEAAEAFRPGNESGKDDDAVVETVATARENVEEKEMEDLRNMVLMSPTHCFESGEYGSTEMEFEDIEVSLWSYSL	184

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu3g03106	184	CDD	AP2	32	90	IPR001471	GO:0003700\|GO:0006355
Vimu3g03106	184	Gene3D	AP2/ERF domain	31	89	IPR036955	GO:0003700\|GO:0006355
Vimu3g03106	184	MobiDBLite	consensus disorder prediction	1	26	-	-
Vimu3g03106	184	Pfam	AP2 domain	30	80	IPR001471	GO:0003700\|GO:0006355
Vimu3g03106	184	SUPERFAMILY	DNA-binding domain	31	90	IPR016177	GO:0003677
Vimu3g03106	184	SMART	rav1_2	31	94	IPR001471	GO:0003700\|GO:0006355
Vimu3g03106	184	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	4	182	IPR045277	GO:0003700
Vimu3g03106	184	ProSiteProfiles	AP2/ERF domain profile.	31	88	IPR001471	GO:0003700\|GO:0006355
Vimu3g03106	184	PRINTS	Ethylene responsive element binding protein signature	32	43	IPR001471	GO:0003700\|GO:0006355
Vimu3g03106	184	PRINTS	Ethylene responsive element binding protein signature	54	70	IPR001471	GO:0003700\|GO:0006355

Showing 1 to 10 of 11 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g03106	Vimu-Chr3	44843694	44854033	Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g03106	10	117	AP2-EREBP Transcription Factor Family	AT5G51990	83.333	2.15e-61	188

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vimu3g03106		AP2	2.4e-15	CL0081

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g03106	-		K09286	pvu:PHAVU_007G066500g	333.183

Showing 1 to 1 of 1 entries

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Vimu8g01968	8	25462345	25463007	Vimu3g03106	3	44843694	44854033	ECH
Vimu3g03106	3	44843694	44854033	Vimu3g03106	3	44843694	44854033	ECH
Vimu8g01968	8	25462345	25463007	Vimu3g03106	3	44843694	44854033	PCT

Showing 1 to 3 of 3 entries