Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03105 ATGGATGGCAACCCTTTTGGAAACGTGCCACCACCACCAATACAAGTTCCTGATAACTTCCCTCACTCATCCTCCTCTTCGCCAACCCCAACCACCTCCTCTCCATCTCCCACCCCTTCTGCTGCCTTCCGCTACAAGGGCACGCGCTCCCGTAGCGGTAAGTGGGTGTCCGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGAAATGGCTGCGGCGGCCTATGATGTCGCCGCTCTCGCGTTGAAGGGTCCCGACACGCCCATTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCCGCCACCGATATTCGTGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGGTAAACCCTGATATTGGACAGGAGTCGGAGAGGCCCGAGGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGAGATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCAGTTCCTTTTCTTCTGATGATTCGCCTGGCAATTCTGATGCAGATAACCTTTGGAGTTATACCCTCTGA 612 0.567 MDGNPFGNVPPPPIQVPDNFPHSSSSSPTPTTSSPSPTPSAAFRYKGTRSRSGKWVSEIREPRKTTRIWLGTYPAPEMAAAAYDVAALALKGPDTPINFPNSILSYPIPASLSATDIRAAAAAAAQARLVRAPQESGQAVNPDIGQESERPEEYYDEDELLNMPNLLDEMARGMQVSPPRISSFSSDDSPGNSDADNLWSYTL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03105 203 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vimu3g03105 203 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Vimu3g03105 203 MobiDBLite consensus disorder prediction 178 203 - -
Vimu3g03105 203 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vimu3g03105 203 MobiDBLite consensus disorder prediction 1 58 - -
Vimu3g03105 203 Pfam AP2 domain 49 92 IPR001471 GO:0003700|GO:0006355
Vimu3g03105 203 MobiDBLite consensus disorder prediction 19 45 - -
Vimu3g03105 203 MobiDBLite consensus disorder prediction 172 203 - -
Vimu3g03105 203 MobiDBLite consensus disorder prediction 1 18 - -
Vimu3g03105 203 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Vimu3g03105 203 MobiDBLite consensus disorder prediction 131 152 - -
Vimu3g03105 203 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vimu3g03105 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03105 Vimu-Chr3 44822327 44822938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03105 45 201 AP2-EREBP Transcription Factor Family AT5G52020 57.558 1.48e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g03105 AP2 8.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03105 - - gmx:100813560 302.753