Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03094 ATGGACGGGAATCGAAATGAGTTCGGTATTTTGCATGAAGGTGGTGTTGATGTTGGACCTCAGATGTCCAATAACTTGGACTTGAATGTGGAGCAGAATTGTTGTAGTCCAAACATTGCTCATGCTAGTGACAGTCAATCTTGTCCTCCATCAAAAAGTGTACACAGCACAAATACTGTTTTGGGAATTGGTGCAGAATTCGAGTCTGATGATCATGCATACCGATTCTATAATAAGTATGCCACTTTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCAGGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAGGGGTACCGCAGGAAAGACAAAAGGGATGTCAATGTGAAGAAGCATAGGAAGGAAACGAGAACTGGCTGCTTGGCACATATGATAGTCACTCGGCAGCCAAATGGAAAATACCAGGTCACCCATTTTGAAGCACAACATAATCATGACAATGTAAACCATAACAATGCTAACGTGGTAAACTTGCTAAATGAATTTAGTGTTGCTCGAGCTGGGGAAGCTGAATCAAACAATAGTTTGGGACCTAAATCAGAGTCAGCATTAGATATGTTGAATAAAAAAATAAGTGCACACGAATCTCTTGATATACTTTCAATGAATTATGACAACTATCTTCATTGTGCAAGGGAAAGAGATATGAGGGAAGGAGAAGCAGGGCGTTTGCTTTGTTACTTCCAAAGGCAGCACTTCGAAAATCCAGCATTTTTTTATGCCATACAGCTTGATGTTGATGACAAGGTTAGCAATATTTTTTGGTCTGACGACAGTATGGTCGTGGATTTTGATCACTTTGGAGATGTCATTTGTTTGGATACAATTTGCAGAACGAATGAAGATCTTCGGCCACTTGTACAGTTTTTAGGTGTTAACCATCACAGACAAGTTTTAATATTTGCTGCTGCTTTTTTGTATGATGATTCCATTGAATCATTTACATGGTTATTTCGAACTTTCATTAATGCTATGTCCGGGAAAAAGCCAAAGGCCATTCTCACAGAACAAGAAGCTGTAATCATTGAAGCAGTCAATACAGTTTTACCTGACACAAATCATTGTACATGTGTATGGCAGTTGTATGAGAACACTTTGAAACACCTTAGTCATCTTGTAAAGGATGCAGAATCTCTTGCAAATGATCTGCGGAGCACTATTTATGACCCCAAGGATGAGGAGGAATTTACTCATTCTTGGGAAACTGTGCTAGAGAAGTATAATCTGCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTCTTTGGTCGGAATACATTTTTTGTAGACATCAAAGGCTTTCATTTAGCTGAGATTTTGTCTCATAAGTTTAGAAGTTATCTAAATCCTGAAATTGATGTCGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTAGGTGAACAGCGTTATAAAGAAATAGAAGCTAGTGACGAAATGAGCAGGTGTTTGCCAAGACTAATGGGTGATGTGGTTCTGTTGAAGCATGCAAGTAATATTTATACACCAAGAGCATTTGAAGTATTTCAGCGAGCATACGAGAATTCTTTGAATGTTATTGTTAATCAACACAGTAGAAATGGATCATTGTTTCAGTACAAAGCAAATACATTTGGGCATAATAGACAATACACTGTCACCTTCAATTCCTCTGATGACACAGTTGTCTGCAGTTGTATGAAGTTTGACCGTGTTGGATTTCTGTGTGATCATGCGCTTAAAGTTCTTGATCAAAGAAACATAAAAGTAGTTCCACCTCAGTACATCTTGGAGAGATGGACTGAAGATTCGAGGATGGGAAATCTTAGAGAGATTAGGCAATGTAAAATGCAAGATAATCCTAAAAGGGTTGTTGCTAGCTGTTACAAAGACTTGTGCCACAAATTGCTCAAGTTGTCAACAAGAGCGTCGGAATCCGAGGAGGCCTATCAATTTGCTATGAGGCAACTTGATGAAGTGATGGTAGGAGTGGAGAAAATCTTGACACCGAAAGATGAAGGTGAAGTTGTCACCTCACGTAATACTGATGCAGATGCTTCAGAAAGCGAGCCTGCAAAGATCTTTCCGAATGAGCATGTAATTGAGGATCAGGATGAAATTAACAGCGCAAATGGTGGAAAAGACAGGAGAGCCACGTCAGACAGGGGGCACTTAACAACCATGACATGTAATGGAGCTGATTCTGACAGGGTTTTGAATGTAGAAGAATCACCGCAAAATACTGTTGTCTGTATTTCGAGCCCCCCCTCTACATATGTTTCATCTCAGCCTGCAGCACCGAATCCGATTGTGCAGGGTTTGTACAGTTTTGAAGCCAATCAAGTGGTTAACTGCATGTATGAGCAGACTAATCTTATGGTGAACAGTCAATCTAATTCTAGCATGATGCAACCGCAAAACATCTTTTCTAACCCACAGGATTCTCCTGGTCAATCTCAACTATTGCAGGAGCCTATAATCCAGAGCACTTACCTTGAGTCCATGCCAATCAATAATCAGATGCGGCAGGGAATGGATCTTGACATCCAAAATCCTCATTCGTCGTCGTTCTTGCTGTATGACCATAGATACAGAAGTTCCGAGTCTGCATGA 2655 0.4004 MDGNRNEFGILHEGGVDVGPQMSNNLDLNVEQNCCSPNIAHASDSQSCPPSKSVHSTNTVLGIGAEFESDDHAYRFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAQHNHDNVNHNNANVVNLLNEFSVARAGEAESNNSLGPKSESALDMLNKKISAHESLDILSMNYDNYLHCARERDMREGEAGRLLCYFQRQHFENPAFFYAIQLDVDDKVSNIFWSDDSMVVDFDHFGDVICLDTICRTNEDLRPLVQFLGVNHHRQVLIFAAAFLYDDSIESFTWLFRTFINAMSGKKPKAILTEQEAVIIEAVNTVLPDTNHCTCVWQLYENTLKHLSHLVKDAESLANDLRSTIYDPKDEEEFTHSWETVLEKYNLQQNEWLRWMYREREKWAVVFGRNTFFVDIKGFHLAEILSHKFRSYLNPEIDVVQFFKHFERVVGEQRYKEIEASDEMSRCLPRLMGDVVLLKHASNIYTPRAFEVFQRAYENSLNVIVNQHSRNGSLFQYKANTFGHNRQYTVTFNSSDDTVVCSCMKFDRVGFLCDHALKVLDQRNIKVVPPQYILERWTEDSRMGNLREIRQCKMQDNPKRVVASCYKDLCHKLLKLSTRASESEEAYQFAMRQLDEVMVGVEKILTPKDEGEVVTSRNTDADASESEPAKIFPNEHVIEDQDEINSANGGKDRRATSDRGHLTTMTCNGADSDRVLNVEESPQNTVVCISSPPSTYVSSQPAAPNPIVQGLYSFEANQVVNCMYEQTNLMVNSQSNSSMMQPQNIFSNPQDSPGQSQLLQEPIIQSTYLESMPINNQMRQGMDLDIQNPHSSSFLLYDHRYRSSESA 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03094 884 MobiDBLite consensus disorder prediction 722 744 - -
Vimu3g03094 884 Pfam MULE transposase domain 285 379 IPR018289 -
Vimu3g03094 884 ProSiteProfiles Zinc finger SWIM-type profile. 565 601 IPR007527 GO:0008270
Vimu3g03094 884 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Vimu3g03094 884 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 679 IPR031052 GO:0006355
Vimu3g03094 884 MobiDBLite consensus disorder prediction 722 736 - -
Vimu3g03094 884 SMART 26again6 576 603 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03094 Vimu-Chr3 44716018 44719072 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu3g03094 MULE 1.3e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03094 - K17604 gmx:100809803 1424.84