Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03092 ATGGGCTTTCTCCGTCGAATTTTCGGCGCCAAAAAATCCTCAGACTCCAAACCCCCCAAGAAAAGATGGGCCTTCCTCAAGCCCACAGCCCGGAACAAGTCACTCCCACCGCCACCGCCCCCCTCTGCCTTCAACACCCACTTTGATTCTTCCAATCCTTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACCGCCGCCGTCGCCGAGGCCGCTTTAGCCGCTGCGCACGCCGCAGCAGAGGTTGTCAGACTCACGAGCGGCGCCACCGCCGCCACAAGTACCAGCAACAGCACAAGACCGGCCGCCGCGGCGCGTGTTAGCCAGCTGCGGTTGCCGGAGCAGACTGCCGCTGTTAAGATACAATCGGCGTTCCGTGGCTACCTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTTAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAGACATTGGTGAGACTTCAGGCCCAGGCACGTGCAAGCCGTTCGCACTTGTCATATAATACGCTTTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAACAACATGAACACCCACCTCGTGTCCTGAATACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAATGCCAACTTTAGGAACGTTGACTCAGAACGACCCCGGTTTGATTCAAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAAGCAAACTGGAGATGCTTCGTTGAAAACTGGACGCCCAGACGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCTCACCACAGTAGCAGCTCCTTTCAGACAGCACATTATTATTTGAGTTCTGACTACAATAATGATAACTTTACGGCACATGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGTTTCTCATCAAGGGAGGTGTTGCAGCTGAACTCTCTGAAATTTCAGAAGGGGAAAGAGGAAGCAACTTCAAGAACTGCTGACAATAGTCCACAAGCTTTTTCAGCCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCGGGAGTGAGTACTCCTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAACACTGAATCTTTTCAAGCCAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGACACAGTTCCACTAGGAGACCTGTTCATGTGGTGGGGCCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTCTTACCTGCTTCTAACACTGTCAACAGAATTGGGAGTAGTAATTTAAGGTGA 1386 0.4978 MGFLRRIFGAKKSSDSKPPKKRWAFLKPTARNKSLPPPPPPSAFNTHFDSSNPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGATAATSTSNSTRPAAAARVSQLRLPEQTAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRSHLSYNTLSFKSSLSHYPVPEQHEHPPRVLNTKFDGSSILKRCSSNANFRNVDSERPRFDSNWLNRWMELDNKCKQTGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHSSSSFQTAHYYLSSDYNNDNFTAHESPSKRSAKALNQSFSSREVLQLNSLKFQKGKEEATSRTADNSPQAFSANSRNGSGARRGPFTPTGSEYSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRHSSTRRPVHVVGPNSDQDSDLRNKVLPASNTVNRIGSSNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03092 461 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vimu3g03092 461 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Vimu3g03092 461 MobiDBLite consensus disorder prediction 403 443 - -
Vimu3g03092 461 MobiDBLite consensus disorder prediction 341 375 - -
Vimu3g03092 461 MobiDBLite consensus disorder prediction 412 426 - -
Vimu3g03092 461 MobiDBLite consensus disorder prediction 350 372 - -
Vimu3g03092 461 SMART iq_5 138 159 IPR000048 GO:0005515
Vimu3g03092 461 SMART iq_5 115 137 IPR000048 GO:0005515
Vimu3g03092 461 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vimu3g03092 461 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Vimu3g03092 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 161 IPR027417 -
Vimu3g03092 461 MobiDBLite consensus disorder prediction 1 50 - -
Vimu3g03092 461 Gene3D - 115 167 - -
Vimu3g03092 461 Pfam Protein of unknown function (DUF4005) 355 421 IPR025064 -
Vimu3g03092 461 PANTHER IQ-DOMAIN 5-RELATED 16 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03092 Vimu-Chr3 44708283 44712358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03092 1 423 IQD Protein Family AT5G62070 46.528 1.10e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03092 - - gmx:100783694 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03092 3 44708283 44712358 Vimu3g03092 3 44708283 44712358 ECH
Vimu8g01990 8 25771317 25775483 Vimu3g03092 3 44708283 44712358 PCT