Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03089 ATGTTGAGTTGTGATTGGTGGCGGACATCACGAACCCCTCTTTCTAGCATGGACCCCACACTCAATCGGTCAAGTGTGAAATATAGAAAAACAAGGGTTCTCCTTCTCATGTCACTGTTTTGTGTTATTTCTGCTGTTGGGGTTGCAGACATGATATGCAGTTGGGGTGCAAGAGTTGTTGTGACTGATAATTATTTCTCAATCCATTTCCTCTTCAATGCAAAATTCATCTTCCTTCTCCTACTCAAATGTATGGTTTCGGTCTCCATCTCCAGACATCTTATTTTTTGTTTATTTCTCTGTTGCTATTATTATGTTCTACAGCAAAGGAAAATGGAGGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAAAGCCGCTCTGGAAGTGATAACTTCGATGGTGTATCTGGTGATGATCAGGACGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGGTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAACCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTCTGATGAAGGAAGCAATGTCAAATCCAGTGTGTAACAGCTGTGGTGGGCCAGCGATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCAATGACCGGTCCCATGGCTCTACCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGAAGTGGGCTTGGTGGTTCAAGCACTCTCGGCACCCCCTTACCAATGGGACTTGACTTGGGAGATGGTGTATTGGGCACTCAAACTGCAATGCCTGGGATTAGACCATCATTGGGGTTGATGGGAAACGAAGTTCAGCTTGAGAGATCTATGCTTATAGATCTTGCGTTGGCTGCTATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAATCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCAATGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGATTGCTAGAGCCATCAACCTCGATGTTATATCCAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGGAATATGCATTTCAGATGCATGCTGAGGTACAATTGCTTTCACCACTAGTCCCCGTTCGCCAAGTGAGATTCATACGGTTCTGTAAGCAACATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTATTGATGTTGGTCACGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGGCGTTCACCAACTTTATCGTCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACTCTCCAGAGGCAGTGTGAATGCTTGGCTATCCTCATGTCGTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTCGGAGGAGCATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCGGGGGTTTGTGCTTCGTCTGCTCGCAAGTGGGACATGCTTCACATTGGGACTCTTGGTGATGACATGAAGGTGATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCAGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCGATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCCAACGCTGTTAATGCGAACGATAGCAGTATGCTGATTCTGCAAGAGACATGGATGGACGCGTCGTGCTCGGTGGTGGTATATGCGCCAGTTGACGTGCAATCACTGAACGTGGTAATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTCGCCATTGTCCCCGATGGTCACTGCAACAACAGCAGCAGCAGTTGCAATGGGACAATGCAGAAGGGTGGCGGAGGGGAAGACAGCGGCGGAAGCCTTCTGACGGTGGGGTTCCAAATTCTGGTGAACAGTCTCCCAACAGCAAAGCTGACAGTAGAGTCAGTGGACACTGTGAATAACCTGATTTCGTGCACCATTCAGAAGATCAAAGGTGCTCTGAGAGTCGCATAA 2610 0.4674 MLSCDWWRTSRTPLSSMDPTLNRSSVKYRKTRVLLLMSLFCVISAVGVADMICSWGARVVVTDNYFSIHFLFNAKFIFLLLLKCMVSVSISRHLIFCLFLCCYYYVLQQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSMTGPMALPTSNSGLELGIGRSGLGGSSTLGTPLPMGLDLGDGVLGTQTAMPGIRPSLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEVFNHEEYARLFSPCIGPKPNGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVEYAFQMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDMLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAIVPDGHCNNSSSSCNGTMQKGGGGEDSGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03089 869 CDD homeodomain 164 222 IPR001356 GO:0003677
Vimu3g03089 869 Pfam START domain 375 603 IPR002913 GO:0008289
Vimu3g03089 869 SUPERFAMILY Bet v1-like 631 863 - -
Vimu3g03089 869 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Vimu3g03089 869 ProSiteProfiles START domain profile. 365 606 IPR002913 GO:0008289
Vimu3g03089 869 Gene3D - 152 238 - -
Vimu3g03089 869 FunFam Homeobox-leucine zipper protein GLABRA 2 374 602 - -
Vimu3g03089 869 Coils Coil 216 251 - -
Vimu3g03089 869 CDD START_ArGLABRA2_like 369 602 - -
Vimu3g03089 869 SMART START_1 374 603 IPR002913 GO:0008289
Vimu3g03089 869 MobiDBLite consensus disorder prediction 137 171 - -
Vimu3g03089 869 FunFam Homeobox-leucine zipper protein HDG1 151 238 - -
Vimu3g03089 869 Pfam Homeodomain 165 220 IPR001356 GO:0003677
Vimu3g03089 869 SUPERFAMILY Bet v1-like 367 603 - -
Vimu3g03089 869 SMART HOX_1 163 226 IPR001356 GO:0003677
Vimu3g03089 869 SUPERFAMILY Homeodomain-like 150 222 IPR009057 -
Vimu3g03089 869 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Vimu3g03089 869 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 161 866 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03089 Vimu-Chr3 44685847 44691657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03089 56 866 Homeobox Transcription Factor Family AT3G61150 58.445 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu3g03089 START 7.4e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03089 K09338 - gmx:100794400 1390.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03465 7 29303521 29309361 Vimu3g03089 3 44685847 44691657 ECH
Vimu3g03089 3 44685847 44691657 Vimu3g03089 3 44685847 44691657 ECH