Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03086 ATGCTCCATATTCCTCTAAACAAACCAAACCCTTCTCTCATTCTTCCCTCTGCCACTCTCTTCATGGCTCTTCCCTTCAACCTCCTATACTCCTACCTCCTCCTGCTCTTCTTGTGTTTTCTGCATGTCACCGCAGAACAAAGCAACGACAAGCTTTACCTTCTTTCCTTCAAAGAGGCTCTCCAAAACCCTCACGTTCTCCCTTCCTGGAACCCCGCCACCCCGCACTGCCACTGGGTCGGCGTCACGTGCCAACTCGGACGAGTCACTTCGCTCTCTCTTCCCAACCGCAACCTCAGAGGAACACTCTCTTCCTCGCTCTTCTCTCTCTCTTCACTCTCTCTCCTCAACCTACGTGACAACCAGCTTACGGGGGAGATCCCCGGCGAGCTCGGCCGGTTGCTTCAGCTCGAAACTCTCCGACTCGGCTCCAACTCGCTCGCCGGGAATATCCCGCCGGAGGTGGGGCTCTTGACGAAGCTATGCACTCTCGACCTCTCCGGGAACTCGCTCGTTGGAGAAGTGCCGGAGAGCGTCGGGAATTTGACCCGGCTTGAGTTTCTCGACCTCAGCAACAACTTTTTATCCGGCTCTCTTCCGGTGAGTCTCTTTACCGGAGCGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGAAACTGGCGGAACATCAGTGCCCTTTACGTGGGGATCAACAAGTTGTCTGGGACTTTACCGAGGGAGATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCTCCTTCCTGTTCCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTAAAAGCGTTGACCAAGCTTGACCTTTCTTACAATCCCTTGAGGTGTTCGATTCCTCGGTTCATTGGGGAACTGGAGAGCTTGAAAATTTTGGACCTTGTGTTTGCCCAGCTTAACGGGTCGGTGCCGGCCGAGCTTGGGAAGTGTAAGAATTTGAGGTCTGTGATGCTATCTTTCAATTCACTCTCTGGGTCTCTGCCTGAGGAGCTTTCTGAGCTTCCCATGTTAACCTTTTCTGCCGAGAAAAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTGGGGAAGTGGAGCAATATCGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTTATTCCTCCTGAACTTGGGAATTGTTCTGTGATGGAGCACCTCAGTTTAAGCAGTAATTTGCTGACAGGTCCTATTCCTGAGGAGCTTTGTGATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTCTCTGGTACTCTTGAAAAAGTGTTCGTCAAGTGTAAGAACCTTACACAGTTGGTTTTGATGAATAATAGGATTGTTGGTTCTATACCCGAGTATCTTTCTGAGTTACCGTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAAATACCTTCTGGGCTGTGGAAATCATTGGCTCTGATGGAATTCTCCGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAATGCAGTTATGCTGGAGAGGCTTGTTCTTAGCAATAATCGTCTGACAGGTACTATTCCTAAGGAAATTGGGAGACTCTCCAATCTTTCAGTTCTTAATTTGAACGGGAATATGCTTGAAGGGAGTATCCCAACTGAGCTTGGTGGCTGCACTTCCCTCACCACACTGGACCTTGGAAATAATAAGCTGAACGGGTCTATTCCTGAGAAACTGGTTGAACTGAGCCAGTTGCAGTGTCTGGTTCTTTCTCACAATAATCTATCTGGGTCCATTCCTGCCAAAAAATCTTCATATTTTCGACAGCGTAGCATCCCTGATCTGAGCTTTGTCCAGCATCTTGGCGTGTTTGATCTCTCTCACAACAGATTGTCTGGCCCCATACCCGATGAAATTGGGAGTTGTGCAGTGGTCGTGAATCTCTTAGTTAGCAACAACATGCTCTCTGGTAGCATTCCTAAATCACTCTCACTCTTGACGAATCTTACAACTTTGGATCTGTCTGACAACTTGTTGTCGGGTTCCATTCCACTGGAGCTTGGAGGTGTGCTCAAGCTCCAGGGTTTGTATTTGGGACGTAATCAGCTGTCAGGTACCATCCCTCAAAGCTTTGGAAAGCTGACTAATTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTTCAATTCCGGTGAGTTTTGAGAACATGAAAGGGTTGACTCACTTGGATTTGAGCTATAATGAGCTGAGCGGCGAGCTTCCTTCTTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGATTTACGTGCAAAATAACAGGCTTTCAGGCCAACTAGGGGAACTCTTCTCAAACTCCATGACATGGAGGATTGAGACAGTGAATTTAAGTGACAACTGCTTCAATGGGAACTTGCCGCGGTCTTTGGGAAATCTTTCTTACCTGACAAATTTGGATCTTCATGGAAATATGTTTACTGGAGACATTCCTTTAGACCTTGGGGATCTTATGCAAATGGAATATTTTGATGTTTCAGGTAATAAACTATCTGGAAGGATTCCAGAAAAGTTATGCGGCCTAGATAATCTGGTTTACCTAGATGTGTCAAGAAACAGGTTGGAAGGGCCGATACCAAGTAATGGTATTTGCCAGAACCTACCCAGATTTAGACTTGCAGGGAACAGAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAAGCATTGGAAGATCAGTATTGTATAATGCATGGCGGCTTGCTGCAATTGCGGTTACACTTTTGCTGCTAACTCTGAGCATTGCTTTTGTTCTGCATAAATGGATTACCAGGAGGCAAACTAATCCTGAGGAGCTTGTGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAGCCATTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTGGACATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACGGTTGCAGTGAAGAAGCTTAGTGAGGCAAAAACGCAAGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTCGTTGAATTACTTGGATATTGCTCAATCGGAGAGGAGAAACTGCTCGTTTATGAATATATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAAGACCGGGGCACTTGAAATCCTGAGCTGGAACAAACGTTACAAAATTGCAACTGACGGAGCTCGAGGATTAGCTTTCCTTCATCATGGTTTTATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTGAATGAAGATTTTGAGCCAAAGGTTGCAGATTTTGGACTGGCAAGACTGATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGACGTTTACAGTTTTGGGGTCATTTTGCTTGAACTTGTGACTGGTAAAGAGCCAACAGGACCAGATTTTAAAGAGATTGAAGGTGGTAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTTGATCCATCAGTTCTTGATGCTGACTCAAAGCAGATGATGCTTCAAATGCTGCAAATTGCTTGTGTTTGCATATCTGACAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGGGGAGTAG 3873 0.4573 MLHIPLNKPNPSLILPSATLFMALPFNLLYSYLLLLFLCFLHVTAEQSNDKLYLLSFKEALQNPHVLPSWNPATPHCHWVGVTCQLGRVTSLSLPNRNLRGTLSSSLFSLSSLSLLNLRDNQLTGEIPGELGRLLQLETLRLGSNSLAGNIPPEVGLLTKLCTLDLSGNSLVGEVPESVGNLTRLEFLDLSNNFLSGSLPVSLFTGARSLISVDISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMAKLKALTKLDLSYNPLRCSIPRFIGELESLKILDLVFAQLNGSVPAELGKCKNLRSVMLSFNSLSGSLPEELSELPMLTFSAEKNQLHGPLPSWLGKWSNIDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGPIPEELCDAASLLEVDLDDNFLSGTLEKVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGLWKSLALMEFSAANNRLEGSLPVEIGNAVMLERLVLSNNRLTGTIPKEIGRLSNLSVLNLNGNMLEGSIPTELGGCTSLTTLDLGNNKLNGSIPEKLVELSQLQCLVLSHNNLSGSIPAKKSSYFRQRSIPDLSFVQHLGVFDLSHNRLSGPIPDEIGSCAVVVNLLVSNNMLSGSIPKSLSLLTNLTTLDLSDNLLSGSIPLELGGVLKLQGLYLGRNQLSGTIPQSFGKLTNLVKLNLTGNKLSGSIPVSFENMKGLTHLDLSYNELSGELPSSLSGVQSLVGIYVQNNRLSGQLGELFSNSMTWRIETVNLSDNCFNGNLPRSLGNLSYLTNLDLHGNMFTGDIPLDLGDLMQMEYFDVSGNKLSGRIPEKLCGLDNLVYLDVSRNRLEGPIPSNGICQNLPRFRLAGNRNLCGQMLGINCQDKSIGRSVLYNAWRLAAIAVTLLLLTLSIAFVLHKWITRRQTNPEELVERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVELLGYCSIGEEKLLVYEYMVNGSLDLWLRNKTGALEILSWNKRYKIATDGARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPSVLDADSKQMMLQMLQIACVCISDNPANRPTMLQVHKFLKGMKGE 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03086 1290 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 47 200 - -
Vimu3g03086 1290 SUPERFAMILY L domain-like 627 906 - -
Vimu3g03086 1290 PRINTS Leucine-rich repeat signature 185 198 - -
Vimu3g03086 1290 PRINTS Leucine-rich repeat signature 673 686 - -
Vimu3g03086 1290 Pfam Leucine rich repeat N-terminal domain 49 84 IPR013210 -
Vimu3g03086 1290 FunFam leucine-rich repeat receptor protein kinase EMS1 204 354 - -
Vimu3g03086 1290 Pfam Protein tyrosine and serine/threonine kinase 1015 1284 IPR001245 GO:0004672|GO:0006468
Vimu3g03086 1290 Gene3D Transferase(Phosphotransferase) domain 1 1088 1290 - -
Vimu3g03086 1290 Pfam Leucine rich repeat 723 782 IPR001611 GO:0005515
Vimu3g03086 1290 Pfam Leucine rich repeat 136 193 IPR001611 GO:0005515
Vimu3g03086 1290 Pfam Leucine rich repeat 520 578 IPR001611 GO:0005515
Vimu3g03086 1290 Gene3D Ribonuclease Inhibitor 615 917 IPR032675 -
Vimu3g03086 1290 Gene3D Ribonuclease Inhibitor 357 614 IPR032675 -
Vimu3g03086 1290 Gene3D Ribonuclease Inhibitor 205 356 IPR032675 -
Vimu3g03086 1290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1134 1146 IPR008271 GO:0004672|GO:0006468
Vimu3g03086 1290 SUPERFAMILY Protein kinase-like (PK-like) 993 1284 IPR011009 -
Vimu3g03086 1290 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 621 917 - -
Vimu3g03086 1290 Gene3D Phosphorylase Kinase; domain 1 975 1087 - -
Vimu3g03086 1290 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 257 356 - -
Vimu3g03086 1290 SMART LRR_typ_2 566 589 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 110 134 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 625 649 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 745 769 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 721 744 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 673 697 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 182 206 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 279 303 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 867 892 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 158 181 IPR003591 -
Vimu3g03086 1290 SMART LRR_typ_2 541 565 IPR003591 -
Vimu3g03086 1290 SUPERFAMILY RNI-like 91 412 - -
Vimu3g03086 1290 ProSitePatterns Protein kinases ATP-binding region signature. 1018 1041 IPR017441 GO:0005524
Vimu3g03086 1290 FunFam Leucine-rich repeat receptor protein kinase EMS1 355 614 - -
Vimu3g03086 1290 SMART LRR_sd22_2 721 742 - -
Vimu3g03086 1290 SMART LRR_sd22_2 565 591 - -
Vimu3g03086 1290 SMART LRR_sd22_2 182 203 - -
Vimu3g03086 1290 SMART LRR_sd22_2 745 771 - -
Vimu3g03086 1290 SMART LRR_sd22_2 673 694 - -
Vimu3g03086 1290 SMART LRR_sd22_2 446 469 - -
Vimu3g03086 1290 SMART LRR_sd22_2 158 177 - -
Vimu3g03086 1290 SMART LRR_sd22_2 279 305 - -
Vimu3g03086 1290 SMART LRR_sd22_2 843 869 - -
Vimu3g03086 1290 SMART serkin_6 1012 1284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03086 1290 SUPERFAMILY RNI-like 360 604 - -
Vimu3g03086 1290 FunFam serine/threonine-protein kinase BRI1-like 2 973 1087 - -
Vimu3g03086 1290 ProSiteProfiles Protein kinase domain profile. 1012 1284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03086 1290 FunFam serine/threonine-protein kinase BRI1-like 2 1088 1290 - -
Vimu3g03086 1290 Gene3D Ribonuclease Inhibitor 47 204 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03086 Vimu-Chr3 44655556 44659913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03086 48 1285 Receptor kinase-like Gene Family AT5G07280 59.164 0.0 1394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu3g03086 PK_Tyr_Ser-Thr 9.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03086 - - vum:124838832 2405.94