Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03076 ATGGGGTGTCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACCACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGCAAATACATTTATGTTAAGGCTTGCAAAGAAGTGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTGAGACCAGGACTAAAGAGAGGGAAGTTCACCAAACAGGAAGAAGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAATATCACAGCATTTGCCAGGAAGAACAGATAATGAAATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAATGGATTCTCATAACCAAATGAAGTATGCTAGCTCAAGCTCAGATACCGTGGACTCTTCAAACTCTCTCCAAAATCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAAGCTTGTCAAAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAGTTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTCTTCAGGAGGCTGCAATCCATGATATGTCAGATATACCCTTTGGTGGAGGGTACCACAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTAAATTCAGAGCTGAAGTATGCAAATCAGATGGTGGAAAATGGTTTCATCCTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA 819 0.4017 MGCQPLEKGKPKHKKGLWSPEEDNKLRNHILKQGHGCWSSVPIKAANTFMLRLAKKWKELQTKMDKLSETRTKEREVHQTGRRDNPHPSPHARQQISQHLPGRTDNEIKNYWHSYLKKKEAKAKEMDSHNQMKYASSSSDTVDSSNSLQNLATQGTQSCNFTKEACQSSLPKLLFAEWLSLDQVNSANSVDSFGLRNGFDQNSTLQEAAIHDMSDIPFGGGYHRCLANISAPEILNSELKYANQMVENGFILPGVDLMSSNFSMSNDAIMYI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03076 272 Gene3D - 76 145 - -
Vimu3g03076 272 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 218 227 IPR017972 GO:0005506|GO:0016705
Vimu3g03076 272 ProSiteProfiles Myb-like domain profile. 10 116 IPR001005 -
Vimu3g03076 272 CDD SANT 18 116 IPR001005 -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 130 146 - -
Vimu3g03076 272 SMART sant 14 118 IPR001005 -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 64 89 - -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 122 146 - -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 64 103 - -
Vimu3g03076 272 SUPERFAMILY Homeodomain-like 12 112 IPR009057 -
Vimu3g03076 272 MobiDBLite consensus disorder prediction 7 21 - -
Vimu3g03076 272 PANTHER MYB DOMAIN PROTEIN 55 8 45 - -
Vimu3g03076 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 120 IPR017930 -
Vimu3g03076 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Vimu3g03076 272 Gene3D - 7 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03076 Vimu-Chr3 44570511 44572652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03076 8 179 MYB Transcription Factor Family AT3G48920 39.444 4.70e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03076 K09422 - gmx:100790724 370.933