Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03074 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAGCCTTGGTTGACTACATCAAGGAGCATGGTCATGGAAGTTGGCGTACACTTCCCAAACATGCAGGTCTCTCACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGTATCAAGCGTGGCCCGTTTACTAGTGAAGAAGAAAGCACAATTGTTCAACTCCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAATTACCTGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCTAAGAGAAAAACAGTCGTGTCTGGTTCTGGATCAAACTATTGTCAAGTCTGAATCTCCTTCTACGCGTCACATGGTACAGTGGGAAAGTGTAAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCGTTGCTCAATTCATGGCCAAAGAGTTCAACATGCCCTGATCATTTTCTTCATCTTTGGCATTCTGAGGTTGGAAAGTCATTTCGCATGGTCAAGGGAAAGGAAGGGATTGTGAGTCAAAGTCCTGTCTCACATCCTTCATCCTCGTCTAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAGTACTAGTAGCCTCTATCCATGCATTGAGGATGTGAACATGGTTCATGAACAGATAAGTAGCTACAAACCAAAGCTTGATGACACGGCTGGGTCTGACTCAGGCAATTATGAATTTCTTGATACTTCAGATTCTGCATTAAAGCACCTACTACATATCTCTGATGATGTTGGATTCCTGGGACAGAATGATAATTTCTTGAATCTCCTTGATGCAACATGTGACCAAGATAGTTTCTTTCATATCTCTTCAGAGAAAGGCAATCTTTGA 957 0.4357 MGKAPCCEKHGVKRGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLSRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLREKQSCLVLDQTIVKSESPSTRHMVQWESVRVEAEARLSMESSLLNSWPKSSTCPDHFLHLWHSEVGKSFRMVKGKEGIVSQSPVSHPSSSSKLESCSDVSLQVKNSTSSLYPCIEDVNMVHEQISSYKPKLDDTAGSDSGNYEFLDTSDSALKHLLHISDDVGFLGQNDNFLNLLDATCDQDSFFHISSEKGNL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03074 318 Gene3D - 69 116 - -
Vimu3g03074 318 CDD SANT 69 112 IPR001005 -
Vimu3g03074 318 FunFam MYB transcription factor 69 116 - -
Vimu3g03074 318 FunFam MYB-related transcription factor 13 66 - -
Vimu3g03074 318 CDD SANT 16 61 IPR001005 -
Vimu3g03074 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Vimu3g03074 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vimu3g03074 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu3g03074 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu3g03074 318 Gene3D - 14 66 - -
Vimu3g03074 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vimu3g03074 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu3g03074 318 SMART sant 13 63 IPR001005 -
Vimu3g03074 318 SMART sant 66 114 IPR001005 -
Vimu3g03074 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu3g03074 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03074 Vimu-Chr3 44564185 44566163 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03074 1 292 MYB Transcription Factor Family AT3G61250 51.333 7.16e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g03074 Myb_DNA-binding 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03074 K09422 - gmx:100782075 523.857