Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03057 ATGGTTAGCCAGAGGCAGCGATTGGCTCGCAAGCGATTCAAAGCTGAGCACCCTGAACTGTTTCCGAAGGCCGAGCCCACACCCCCCAAAGACCCTAACAAGAAGAAGAAGAGTAGCGCGTTCAAGCGCAAACGGGCCGAGTCAAAATCCGGCTCCGGTAAAAGACAACCTCTTAGAGTCCCCGGGATGAAGCCCGGCGATAGTTGCTTCATCTGCATGGCCAAAGACCACATCGCCAAGCTCTGCCCCCAAAAGACCGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGTCGACGCGGTCATAGAGCTAAGAACTGCCCCGAGGTACAAGATGCCGCCAAGGATGTCAAGTATTGCTATAACTGTGGGGAAACTGGTCACTCTCTCTCGCATTGTCCGTACCCTCTTGAGGAAGGAGGGACAAAGTTTGCCGAGTGCTTTGTTTGTAATCAGCAGGGACACTTGAGTAGAAACTGTCCTCAAAATACTCATGGGATTTATCCAAAGGGTGGTTGCTGTAAAATTTGTGGTGGTGTGACACATTTGGCTAAAGATTGTCCTGACAAAGGATCGCAAGGATCTGTTGCTGCTAATGGCCCTGCTGGTAGATCAATGAGAATTGAAGAGAGGCCCAGGGGCCAGGTTACCAAATTTATTAGTGGAGATGATATTGAGGATGACTTCATGATAGATGACATACGCAGTGGCGATAATAACAAGTCAGCAAATTCAAACGATGTCAATGTAACAGCAAAGAAGAAAGATCCTAAAGTTGTGATATTTTAA 789 0.4766 MVSQRQRLARKRFKAEHPELFPKAEPTPPKDPNKKKKSSAFKRKRAESKSGSGKRQPLRVPGMKPGDSCFICMAKDHIAKLCPQKTEWEKNKICLRCRRRGHRAKNCPEVQDAAKDVKYCYNCGETGHSLSHCPYPLEEGGTKFAECFVCNQQGHLSRNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKGSQGSVAANGPAGRSMRIEERPRGQVTKFISGDDIEDDFMIDDIRSGDNNKSANSNDVNVTAKKKDPKVVIF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03057 262 SUPERFAMILY Retrovirus zinc finger-like domains 115 163 IPR036875 GO:0003676|GO:0008270
Vimu3g03057 262 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 MobiDBLite consensus disorder prediction 12 35 - -
Vimu3g03057 262 SUPERFAMILY Retrovirus zinc finger-like domains 61 110 IPR036875 GO:0003676|GO:0008270
Vimu3g03057 262 PANTHER OS04G0555800 PROTEIN 1 262 - -
Vimu3g03057 262 Gene3D - 62 114 - -
Vimu3g03057 262 Pfam Zinc knuckle 119 134 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 Gene3D - 115 167 - -
Vimu3g03057 262 ProSiteProfiles Zinc finger CCHC-type profile. 120 134 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 MobiDBLite consensus disorder prediction 1 62 - -
Vimu3g03057 262 FunFam Zinc finger CCHC-type-containing 9 144 196 - -
Vimu3g03057 262 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vimu3g03057 262 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03057 94 190 C2H2 Transcription Factor Family AT5G20220 28.947 3.06e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03057 - - gmx:121174300 422.165