Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03054 TTATATACAAATGTATCACACTCTCACATTTCCAATGCCTATCTGTCCTGTCATAACCACACCACAATGCAGGCTCCAAAAGCACTCACCGGATTGCTCCACCGCGTCGCCGGAATATTCCCTTCCCACCATGCCGTCTCTGTCTCAGGCAAATTCCAACTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGCACGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCATCGCACTCACCTTCCCCAACACCGTCGAGTTTATTATAACGTTTCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACTCGGCTTACACGGGGGAAGAGTTCGAGTTTTATTTATCCGACTCAGAGTCAAAGCTGTTAATAACATCAAAAGAAGGGAACGAACCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCTTCGCTCGACGAAGCAGAAGCCGAAGAGCTCAGTCTCTCCCTGAGTTACACCGAGTCACCGACCGCCTCGATTTCCGAACTCGTTAACGACGCGTCCGACGTGGCACTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGAACAACTTGGCCTCATCGGTGGAGAACATCAAGTCCGTTTACAAACTCACTGAATCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGAGTTCACTAGCCGCTGGAGCCTCCGTGACGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTACACCAAATATTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTAATATTGGAGCGGTTGGAAGAAGAGTTTGGGGCACCGGTTTTAGAGGCTTATGCTATGACGGAAGCGTCGCATTTAATGTCGACGAATCCATTACCCGAAGATGGGCCTCATCGGGCCGGGTCCGTTGGAAAGCCCGTGGGCCAGGAAATGGCAATATTAGACGAGAAGGGTGAGATTCTAAAGAACGATGTGAACGGTGAGGTTTGTATTAGGGGACCCAATGTTACCAAAGGGTATAAAAATAACCCTGATGCGAATATTTCTGCCTTTGAATACGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCATCTGGTGGGTCGGATCAAGGAGCTTATTAATCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTCCTTCTATCTCATCCAGAAATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAATATGGCGAAGAGATAAAGTGTGCGATAATCCGAAAAGAAGGATCAAAGATAGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAATCTTGCAAGCTTCAAAGTCCCTAAAGAGGTGTTCATCACTGATTCTTTACCAAAGACAGCCACTGGCAAGATTCTGAGGCGTATTGTAGCACAACACTTCATTTCTCAAACTTAA 1614 0.5136 LYTNVSHSHISNAYLSCHNHTTMQAPKALTGLLHRVAGIFPSHHAVSVSGKFQLTHSRLHHLVERAAARLLSAGIKPGDVIALTFPNTVEFIITFLAVIRARATAAPLNSAYTGEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESPTASISELVNDASDVALFLHTSGTTSRPKGVPLTQNNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGASVTLPAAGRFSASSFWSDMLTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEEFGAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILDEKGEILKNDVNGEVCIRGPNVTKGYKNNPDANISAFEYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEIKCAIIRKEGSKIDEAEVQRFSKKNLASFKVPKEVFITDSLPKTATGKILRRIVAQHFISQT 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03054 537 Pfam AMP-binding enzyme 38 439 IPR000873 -
Vimu3g03054 537 Gene3D - 20 432 IPR042099 -
Vimu3g03054 537 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Vimu3g03054 537 PANTHER ACYL-COA SYNTHETASE 27 533 - -
Vimu3g03054 537 FunFam Peroxisomal-coenzyme A synthetase 28 432 - -
Vimu3g03054 537 SUPERFAMILY Acetyl-CoA synthetase-like 25 535 - -
Vimu3g03054 537 FunFam 4-coumarate--CoA ligase 2 435 536 - -
Vimu3g03054 537 CDD FACL_fum10p_like 41 531 IPR045310 GO:0016874
Vimu3g03054 537 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vimu3g03054 537 Gene3D - 433 534 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03054 Vimu-Chr3 44388283 44390345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03054 22 536 Monolignol Biosynthesis Gene Families AT4G05160 31.402 9.34e-62 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03054 K22133 - gmx:100783685 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02102 8 27152771 27160715 Vimu3g03054 3 44388283 44390345 ECH
Vimu3g03054 3 44388283 44390345 Vimu3g03054 3 44388283 44390345 ECH
Vimu8g02102 8 27152771 27160715 Vimu3g03054 3 44388283 44390345 PCT