Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03039 ATGGAGTTTTTAGGGCTATATGGGCTTCTTGTTGCCTTCTATGTCGTACTTTTTCTCTTCTTGTTCTTCATACTAATTTTTTCTTGGTGGGTTTTCCCTAACCAAAAACTTAAGATGCTTAAGAAATGTGGGTTGGAAGGGCCAACCCCAAGTTTTCCACTTGGGAACATTGAAGAGATGAAAAGAAAGAGTATTATTAAATCTTCAGTTGTTTCCTCAAATCTCCTACACGATATACACTCTTACGTTTTCCCTTACTTCTCTACCTGGCAGAAGTCACATGGAAAGGTGTTCGTGTATTGGTTGGGCACGGAGCCGTTTTTGTACATTGCAGAGCCAGAGTTTTTGAAGAAAATGTCGACAGTGGTGTTGGCCAAAAGATGGGGCAAGCCAAGTGTGTTTAGAAATGACAGAGACCCCATGTTTGGGAGTGGTTTGGTCATGGTTGAGGGCAACGAATGGGTTCGTCACAGGCACATTGTTGCTCCCGCATTCAATCCCATTAACTTGAAGGGAATGGCCAACATGATGGTTGAATCTACGAATCAAATGGTAGACAGATGGTTTACCCAAATAAACTGTGGGAACCCCGAAATCGACGTGGAGAGAGAGATTATAGCAACGGCTGGAGAGATCATAGCAAGAACAAGTTTTGGCATGAAAGATGACAATGCAAGAGATGTTTTCGACAAATTAAGAGCCTTGCAAATGACCCTTTTTAAGACGAATCGATACGTAGGTGTTCCCTTTGGGAAGTATTTCAACGTAAAGAAAACATTAGAGGCGAAGAAACTCGGGAAAGAAATCGACGAACTCTTGCTGTCGATCATAGAATCTCGGAAGAAGTCGGCGAGGAAAAATGGTCAGCAAGATCTGTTAGGTCTGTTGCTGGAAGAAAATCATGAGGTTGATGGAAGCTCAGGGAAGACGTTAACATCGCGAGAAGTTGTTGACGAATGCAAGACCTTCTTCTTCGGAGGTCATGAAACCACAGCACTTGCGATCACGTGGACCTTGCTGCTTCTAGCCATGCACCCAGATTGGCAAACCCAGTTGAGAGACGAGATACGAGAGGTGGTGGGGAACACTGAAGAACTTGATATTTCTATGCTCGCTGGTTTAAAGAAGATGAAGTGCGTAATGAATGAAGTTCTAAGACTGTACCCTCCATCACCGAATGTGCAAAGGCAAGCAAGAGAAGACATAAAAGTTGATGATATAACAGTGCCTAATGGAACGAACATGTGGATAGATGTGGTGGGCATGCACCATGACCCTGAGTTATGGGGAAAGGATGCGAATGAGTTCAGGCCAGAGAGGTTCATGAATGATGTGAATGGTGGATGCAAGCACAAGATGGGTTATTTGCCTTTTGGTTTTGGAGGGAGAATGTGTGTTGGTAGAAATTTGACCTTTATGGAGTACAAGATTGTTTTAACTCTTGTTCTCTCTAAGTTTAGTTTTAAGGTTTCCCCTGATTACAAACATTCACCAGCTATTATGCTCTCCCTGAGGCCTAGTCATGGACTTCCACTCATAGTTGAGCCCCTTTAG 1554 0.4331 MEFLGLYGLLVAFYVVLFLFLFFILIFSWWVFPNQKLKMLKKCGLEGPTPSFPLGNIEEMKRKSIIKSSVVSSNLLHDIHSYVFPYFSTWQKSHGKVFVYWLGTEPFLYIAEPEFLKKMSTVVLAKRWGKPSVFRNDRDPMFGSGLVMVEGNEWVRHRHIVAPAFNPINLKGMANMMVESTNQMVDRWFTQINCGNPEIDVEREIIATAGEIIARTSFGMKDDNARDVFDKLRALQMTLFKTNRYVGVPFGKYFNVKKTLEAKKLGKEIDELLLSIIESRKKSARKNGQQDLLGLLLEENHEVDGSSGKTLTSREVVDECKTFFFGGHETTALAITWTLLLLAMHPDWQTQLRDEIREVVGNTEELDISMLAGLKKMKCVMNEVLRLYPPSPNVQRQAREDIKVDDITVPNGTNMWIDVVGMHHDPELWGKDANEFRPERFMNDVNGGCKHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLVLSKFSFKVSPDYKHSPAIMLSLRPSHGLPLIVEPL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03039 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vimu3g03039 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 Gene3D Cytochrome P450 29 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 Pfam Cytochrome P450 84 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 SUPERFAMILY Cytochrome P450 76 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 22 509 - -
Vimu3g03039 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g03039 517 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03039 Vimu-Chr3 44264792 44266761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03039 1 517 Cytochrome P450 AT5G52400 58.365 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03039 - - gmx:100785284 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03039 3 44264792 44266761 Vimu8g02108 8 27310695 27313648 PCT