Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03034 ATGAATATCCTCGTGGCGCTCGCGTTCTTGTGCCTGGTAACGCTGGCGCCATGGCGCGTTCGCTCGCAACAACAGAGGCTTCTCGTGAACATGACGCTCGTTTCCAAGGCCAAAGCTAAAGGCGCTCTGTGTTTGGACGGAAGTTTACCGGCGTATCACTTGCACAGAGGATTCGGTGCTGGTGAAAACAACTGGCTTCTTCAATTTGAGAGTATGCTGGTTTTGTGGTTTGAAAAAGTGGCTATGGTGTCTTTGTTGTTTTGGGGAGGTGAAGAGGTTGGTTGGTTTCTGAAAATGCCACATGACGATGGCTTTTTTGTCGTGCACCTAGAATTTTGCGCGCGCAGCTTTAGGGAACTGGAATTCACTGTTTTACCACTCAAAGCAAATTCCAAAATGAGCCCATCCACGAAATTTTTTCATCGAAACCATTCCCTCGGAGGTGGATGGTGCAATGACTTAAAATCATGCTTCGAGAGAGCCAAAACTCGGAGGGGTTCATCAAGTTATATGGTCAAATTGGAAGTGTTTTCTGGTATTTTAAGCAACAATGCCACCCTTAATCCTGATTTTTACAACTGGAACCGTGTAAAGCTGAGATACTGTGATGGAGCCTCGTTTACAGGAGACGCTGTGTTCTCTAACAAGACAACAACTCTTCATTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTGACGACCTTCTACCACAAGGTTTGGGAAAGGCACGGAAGGCTTTGCTTTCAGGTTGCTCAGCAGGAGGTTTAGCAACCTTTCACCATTGTGACGACTTCGCCAAGCGATTGCCAACGGATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTCGACGAAAGAGACATCAATTTGAACCACACCATGAGGTTTTTCGTTAAAAGTCTAGTTCGGTTACAGGGGATAGAGCAGAACCTGAATAGAAATTGCACCAGAGAACAGTACTTTCCAGCCTTGTGCTTCTTTCCACAATATGCGTTGAAATACATATCAACACCATATTTTATTTTGAACTCTGCCTATGATGTATACCAATTCCATCATATATTGGCGCCACCCTCTGCGGATTTGCACGGACACTGGAACAAGTGCAGGCTGAACCCGGCTGCATGTACAGCAGACCAAATTGCTATATTGCAAGGTTTTAGGCTCGACATGCTTGGAGCTTTGAAACCATTCTATATGAATTCAAGAAGAGGGGGCGTGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAACCACAGGATACATGGTTTGGAGACGATTCTCCAAGAATAAACAACAAGGTATGGATCTTACTCATTGACAGATTTCGTTATTTGATGTTTCCTCCTTTGAACTTTTGGCACTACAATTTAGTCTGCGATATGGTTAAGGTAAACTATCTTTTACAGACTATTGCAGAAGCGGTTGGTGATTGGTATTTTAGTAGGAATATAAGCAAGGAAATAGACTGTCCATATCCATGCGATGGAACTTGTCATAATACTATACCCGAACCTAAGCTGAGGTGA 1539 0.436 MNILVALAFLCLVTLAPWRVRSQQQRLLVNMTLVSKAKAKGALCLDGSLPAYHLHRGFGAGENNWLLQFESMLVLWFEKVAMVSLLFWGGEEVGWFLKMPHDDGFFVVHLEFCARSFRELEFTVLPLKANSKMSPSTKFFHRNHSLGGGWCNDLKSCFERAKTRRGSSSYMVKLEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGDAVFSNKTTTLHFKGQKIWEAIIDDLLPQGLGKARKALLSGCSAGGLATFHHCDDFAKRLPTDASVKCLSDAGFFLDERDINLNHTMRFFVKSLVRLQGIEQNLNRNCTREQYFPALCFFPQYALKYISTPYFILNSAYDVYQFHHILAPPSADLHGHWNKCRLNPAACTADQIAILQGFRLDMLGALKPFYMNSRRGGVFINSCFAHCQSEPQDTWFGDDSPRINNKVWILLIDRFRYLMFPPLNFWHYNLVCDMVKVNYLLQTIAEAVGDWYFSRNISKEIDCPYPCDGTCHNTIPEPKLR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03034 512 PANTHER NOTUM-RELATED 12 504 IPR004963 GO:0016787
Vimu3g03034 512 Pfam Pectinacetylesterase 147 438 IPR004963 GO:0016787
Vimu3g03034 512 Pfam Pectinacetylesterase 22 70 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03034 Vimu-Chr3 44212874 44224026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03034 1 70 Carbohydrate Esterase AT5G23870 54.286 7.08e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03034 K19882 - gmx:100794453 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03034 3 44212874 44224026 Vimu3g03034 3 44212874 44224026 ECH