Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03030 ATGGGGTTTGGAGGTGATTCAAATTCAATAGCTGAAAAGCCAGAGGAGAATGATGACAACAAGAAGCTTTTGCCACCACTTGCGCCTATGCCACCACTGGAAAATGTGGGCGGATACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAACTGAACGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCTGGTCAACCATTTGTTCTTGATCCACACAGTAATGGGCTGCATCAGTATAGAACGGTCTCTCTGATGTACACGTTTGCTGTGGATGGGGAGAACGATGGAAGTTTGGGACTCCCTGGACGGGTTTTTCAACAGAAATTACCGGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTCTGGCTTTGCCTGTGTTTGAACCTGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGGTTGGGTTTCTTCTAACTTGGCTAATTATGCCCATAATTTGCTCATGTTTGACAAATATCATGTGA 651 0.4393 MGFGGDSNSIAEKPEENDDNKKLLPPLAPMPPLENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYTFAVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALEVGFLLTWLIMPIICSCLTNIM 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03030 216 PANTHER PROTEIN NLP8 17 195 IPR045012 GO:0003700
Vimu3g03030 216 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03030 Vimu-Chr3 44187663 44188885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03030 30 195 NLP Transcription Factor Family AT4G35270 46.707 7.02e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03030 - - gmx:100786118 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02111 8 27394910 27399365 Vimu3g03030 3 44187663 44188885 PCT