Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03029 ATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCTCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTCCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCAGTTGGCTCCCTTCCTGAACCATCTACTCCAAACAAGTTCAGCCAGCCAGTCTCAATGAGCATTAGACCATCAGAACCTCAGATGAAAGTGAATGAATTGAGTGCCTCCAAAGAACTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAGGAAGAATACATAATCTCGAGAGAGTTACCAATGATAAAAGAGGTTTTACTCAGGAGATTGGGAAAGAACCAAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTATCCCAAATGAAAGTTCACATGTAAAAGATATATTCATTACTTCCAACCATGATCAAGGTGCTGTGCTAAGGAGATCACCAGAGTCAACACTACAGCCAGCCATTAATACACCGAACCAGTCCACTCCTTTCCGTATGCCTGAATTTGTGGCTGCAGAACTTCAAGAGCCATTTGGAGGGATGCTAGTAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTATGTCCTTCAGTAGCTGAGGCCATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCTTAGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGAAGTGACACCTTTTGCAGCAACGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTGACATGTGGCATTGCGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTTGAGGTGGGTACGTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTGTCAAGATCATCAGGAAGCAACATAGTCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGAGAGTGA 1134 0.4392 MKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFSQPVSMSIRPSEPQMKVNELSASKELETNREAGMEDQLVGGRIHNLERVTNDKRGFTQEIGKEPKRTRTGSGSSEDSTNPTSHGSWHDSIPNESSHVKDIFITSNHDQGAVLRRSPESTLQPAINTPNQSTPFRMPEFVAAELQEPFGGMLVEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKEVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIAELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIVRVLVHDITSNLGSSCESSGE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03029 377 ProSiteProfiles PB1 domain profile. 282 364 IPR000270 GO:0005515
Vimu3g03029 377 Pfam PB1 domain 282 363 IPR000270 GO:0005515
Vimu3g03029 377 SUPERFAMILY CAD & PB1 domains 278 367 - -
Vimu3g03029 377 Pfam RWP-RK domain 1 21 IPR003035 -
Vimu3g03029 377 CDD PB1_NLP 283 363 IPR034891 -
Vimu3g03029 377 FunFam RWP-RK domain-containing protein 279 363 - -
Vimu3g03029 377 SMART PB1_new 282 364 IPR000270 GO:0005515
Vimu3g03029 377 ProSiteProfiles RWP-RK domain profile. 1 41 IPR003035 -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 62 83 - -
Vimu3g03029 377 PANTHER PROTEIN NLP8 1 376 IPR045012 GO:0003700
Vimu3g03029 377 Gene3D - 279 363 - -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 119 138 - -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 119 160 - -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 61 83 - -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 179 200 - -
Vimu3g03029 377 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03029 Vimu-Chr3 44185197 44186330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03029 1 377 NLP Transcription Factor Family AT4G24020 44.474 2.59e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu3g03029 PB1 2.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03029 - - gmx:100786118 648.277