Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03022 ATGGGTAGCATCGTCGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGGCCTTACTCCCTCAATTCGTTCTACAGGAATCTCTCTGGGTATGAACCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTGCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGGCATTGAGGGTGGGCCTGCATTGTTGGTGTTCAATTCAAATACAGAAAAGTCTACATCGAGATCGACTCCAGATGCATTGAAATATTTAGACTCTGGTGATATGAAAGAAATCCAAAGTCTCAGTTCCAACCGGTCCTTAAATACAAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGGCAGGTTTGATGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTAGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCGCTTATGAGCCAAATTTCTGAGTCCCAGTTTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTCGGTGAAGCAGATACTCCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTCATGATTTCGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTTCTCCGCAACATGCATGTTGCCATTAAAATGTTACCCTCTTATGGTCAAGAGAGTCTATCAAAATTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAACCCAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAGCCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAGAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCATTGACAAACCATATTCGATTTCTAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTGAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2196 0.418 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLNSFYRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPAGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGNLICTRVYSKHTSGIEGGPALLVFNSNTEKSTSRSTPDALKYLDSGDMKEIQSLSSNRSLNTKWSFNKVMDRSKLAGLMFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMSQISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESLSKFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNSPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLYQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRIDKPYSISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03022 731 Pfam U-box domain 662 730 IPR003613 GO:0004842|GO:0016567
Vimu3g03022 731 CDD RING-Ubox_WDSUB1-like 663 718 - -
Vimu3g03022 731 Pfam Protein tyrosine and serine/threonine kinase 385 633 IPR001245 GO:0004672|GO:0006468
Vimu3g03022 731 Gene3D Transferase(Phosphotransferase) domain 1 453 647 - -
Vimu3g03022 731 SUPERFAMILY RING/U-box 653 731 - -
Vimu3g03022 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 731 IPR013083 -
Vimu3g03022 731 CDD STK_N 13 165 - -
Vimu3g03022 731 ProSiteProfiles Protein kinase domain profile. 380 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03022 731 Gene3D Phosphorylase Kinase; domain 1 354 452 - -
Vimu3g03022 731 PANTHER OS02G0152300 PROTEIN 14 727 - -
Vimu3g03022 731 ProSitePatterns Protein kinases ATP-binding region signature. 386 407 IPR017441 GO:0005524
Vimu3g03022 731 Coils Coil 255 296 - -
Vimu3g03022 731 SUPERFAMILY Protein kinase-like (PK-like) 356 640 IPR011009 -
Vimu3g03022 731 ProSiteProfiles U-box domain profile. 661 731 IPR003613 GO:0004842|GO:0016567
Vimu3g03022 731 SMART Ubox_2 665 728 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03022 Vimu-Chr3 44154878 44163890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03022 12 731 U-box Gene Family AT2G45910 40.527 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu3g03022 PK_Tyr_Ser-Thr 3.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03022 - - pvu:PHAVU_007G072300g 1281.54