Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03021 ATGCCAGTTGCAAAACTACCGGCCTCAGGCACAACCGGTTTCACAAAAACAGATGATGGAAATGATTCTTTAGATACAATATTCAGACAAGCAATTGGAAAAGAACCGTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTGCAGCACCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAGAATAGGGAACTTTTAGGGGCATATTGGGATAAGCTCTCCATTGAAGAGGCAAAGGAAGTTGTTTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCGCAATACTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCATCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCGGCAGTGTCGATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACAAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGAGACTAGTAGATGACACTGATGTCATTTTGTGGGTGTCTAGGCTTGTTTGTTGTTCGATTCATTCAATGACATTAGGAGTGAAGTCTTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAAAAGCTACTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAGGAAACGGCAGAAAAAACTCAGACAGAAAGAACACAAGACAAAGGAGCAAATTGAAAACAACACAGAAACTAAAGGAAACATAAGCAGCGCAGGAGAGGATGTATCACCAGGAGAAGCATCTTTGGGTACACGTGACTTCGATGCTCATAATCCAGATATTTTTGCGGATCATTCTCCTCCTCCACCACATGTAACTTCTCACTGCTTAGACACTAATGATGTTATAGAAAAGGATACGCTGTCAGGGTATGATGATTGTGACACGGATCAGTATATAGAGCGGCAGACACTACCAGGACATAATCGCCGGGGCACAGTGCCTGCCAGATGGCAAGGGCTACCAAAATCACAATGGGCTAGAGCCAATGGTTTGAATGTAGGCCAGAATTCTCAACCGACGAAGCTTGGAGTTATTCAAAAGCATAGAACCAGCCATGATCTTAGGGTAGCTCCTATAATCAATGGCAGTAAAGTTTGGAGTCGAAAACCTAAAGCAGAATCTAATGATTTGGTTCTAAAAAACAAACTGCTGAAAGAACCTGACAAAGTTAAAAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTGTTGCCATTCCGGAGGTAACTTTATGGCACCCCAGCGGGATTGCTCGGCAGGGAATCTGTCCAAGCTGAATACTGCTCAGGAGAAACCAGGAAGCAACGGTCGTTTAACAGCTAAGTTTTGGAGGCCTGTTAGCCAGCATGGAACTAAAGACCCATTTCCACTTCAAAATGGTGGGACAGAAGCTGATGCTATAAATGGAAAAATTGATGAAAATTCGTCTGGTCAAAGTAGTTTAAGGTTGTGTAGTGTAGAGGGTAATGATGATATTGATTTTGGGGACAATTTTTCCCATAATGTGGCAAAAGTAGATACAGAAAGTTTACGTCTATCCAGCCATGCTGCAGAATCCTTTCTTGCCCAAAGATGGAAAGAAGCTATCTCGTCAGACCATGTAAAATTGGTTTTCACACCTGATTCTGAGCCTCCTGGAGGACAGTCTGTCCAGGATTGTGAACTAGCAGCAGATGCTTATCTATCTTCTGATGCGGACAGATGTGGCGTTCTTGCAAGTACAGAGAACCGGTTCCCTGCAACCTCTGGAGTAGCAAGATCTAAACCCAAAACGAAGCCTGAAAAAGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAGCAGCCTAG 2130 0.4225 MPVAKLPASGTTGFTKTDDGNDSLDTIFRQAIGKEPLLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRELLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEQKNLVACTSFLLEQKLRLVDDTDVILWVSRLVCCSIHSMTLGVKSWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKTKEQIENNTETKGNISSAGEDVSPGEASLGTRDFDAHNPDIFADHSPPPPHVTSHCLDTNDVIEKDTLSGYDDCDTDQYIERQTLPGHNRRGTVPARWQGLPKSQWARANGLNVGQNSQPTKLGVIQKHRTSHDLRVAPIINGSKVWSRKPKAESNDLVLKNKLLKEPDKVKNHEVLIGSVSVSLGNCCHSGGNFMAPQRDCSAGNLSKLNTAQEKPGSNGRLTAKFWRPVSQHGTKDPFPLQNGGTEADAINGKIDENSSGQSSLRLCSVEGNDDIDFGDNFSHNVAKVDTESLRLSSHAAESFLAQRWKEAISSDHVKLVFTPDSEPPGGQSVQDCELAADAYLSSDADRCGVLASTENRFPATSGVARSKPKTKPEKGMKIKYIPKQKAAA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03021 709 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Vimu3g03021 709 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 707 - -
Vimu3g03021 709 MobiDBLite consensus disorder prediction 679 709 - -
Vimu3g03021 709 Coils Coil 298 318 - -
Vimu3g03021 709 MobiDBLite consensus disorder prediction 304 341 - -
Vimu3g03021 709 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03021 Vimu-Chr3 44144915 44151157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03021 19 706 C2H2 Transcription Factor Family AT4G25610 41.667 1.07e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g03021 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03021 - - gmx:100799153 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03021 3 44144915 44151157 Vimu3g03021 3 44144915 44151157 ECH
Vimu8g02120 8 27527818 27533423 Vimu3g03021 3 44144915 44151157 PCT