LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g03017	ATGCTTACATGGTGGGGAAAATCATCATCAAAAGAAAGCAAGAAGAAATCAAATAAGGAAAGCTTTTTTGACACACTGCACCGGAAATTAAAAATTTCATCTGAAGGTAAACTAAGCACTAGATCTGGAGGATCCCGTAGAAATTGCAATGGCACAGTTTCAGAGAAGGGGGATCGATCTCCAACTGAATCAAGATCACCTTCACCTTCCAAAGTGGCCAGGTGTCAAAGTTTCATTGAAAGACCTCATGCTCAGCCACTTCCTCTTCCTGGTCTGCACCCTTCAAGTGTAGGCCGAGTAGATTCTGAAATTAGCATATCATCAAAATCAAGATTGGAAAAGGTCTCCAAACCATCATTGTTTCTTCCACTTCCAACACCTGGATGCATCCGTTGTAAGCCAAACCCTGCAGATTTGGATGGAGATATGATCACTGCTTCAGTCTTTAGTGATTGCTCTGCTGACAGTGATGAGCCAAACTCACACAATCGTAGTCCTCTAGTGGCTGACTGTGAGACTGGGATTAGAACTGCTGCTGGCAGTCCTTCCAGCTCAATGCCCAAGGATCAGCCAGTTGTCGCTTCCCAGCTCAATTCAGCAGCAGTAAAAAAACCAGGAAGTATTCTAAGTAATCATACATCTTCTACTTCACCAAAACGGAGGCCTTTACGCAACCATGTTCCAAATCTTCAGGTTCCTCCTCACGGTGCCTTCTACAGTGCTCCGGATAGTTCCTTGTCAAGTCCATCAAGAAGTCCACTGAGAGCATTTGGCACAGATCAGGTGTTGAATTCTGCTTTTTGGGCCGGAAAGCCATATTCAGAGGTCAACTTTGTTGGATCTGGACATTGCTCTAGTCCAGGTTCAGGTCACAATTCTGGACATAATTCGATGGGAGGGGACATGTCAGGACCTTTATTTTGGCAACCAAGCAGGGGTAGTCCAGAGTATTCTCCTGTACCTAGTCCCAGAATGACTAGCCCTGGTCCTAGCTCTAGAATTCAGAGTGGAGCTGTCACACCTATTCATCCCAAAGCTGGGGGAACACCCATTGAATCACAGACAGGAAGGGTTGATGATGGGAAACAGCAGACTCATCGTTTGCCACTTCCTCCTTTGTCAGTCTCCAATTCCTCACCATTCTCTCATTCAAATTCTGCAGCAACATCTCCGTCTATGCCAAGAAGTCCTGCTAGAGCAGATAATCCAGGCTCTGGCTCACGTTGGAAGAAAGGAAAGCTGCTTGGTAGTGGCTCATTTGGACATGTCTATCTTGGCTTCAATAGTGAAAGTGGCGAAATGTGTGCAGTGAAGGAGGTTACCCTGTTTTCAGATGATCCCAAGTCAATGGAAAGTGCTAAGCAATTTATGCAGGAAATTCATTTATTAAGCCGTTTACAGCATCCAAATATTGTCCGGTATTATGGTTCTGAAACAGTTGATGACAAGCTTTACATATACCTTGAATATGTATCTGGTGGCTCCATACACAAACTTCTTCGAGAATATGGGCAGTTTGGAGAACTAGTTATTCGTAGCTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTGCATGCTAAAAATACTCTCCATCGGGACATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATCGTGTCCATTATCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGGTTATAAAGAACTCTAATGGATGCAATCTTGCAGTAGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTCGGAAATGTCTTCAGCGTAACCCATATGATCGCCCTTCAGCGAGTGAATTATTGGACCACCCTTTTGTAAAACTTGCTGCACCTTTGGAAAGACCTATTCTGGTTCCTGAAGCATTGGATCCTGTTTCTGGGACTACACAGGGAGCAAAATCTCTGGCAATTGGACAAGCAAAGAATCTTTCTACCTTGGATTCAGATAGACTTGCTGTTCATTCTTCAAGATTTTTGAAAATTAATCCTCATGAAAGTGAAATCCATATTCCAAAGAATATATCTTGCCCCGTATCTCCCATTGGAAGCCCACTTTTAAGGTCAAGATCACCACAGCACAGGAATGGGAAAATGTCTCCTTCTCCCATATCCAGCCCACGAACTGCTTCTGGGGCATCTACACCTCTCGCTGGTGGCAGTGGTGCCATTCCTTTTGGTAATCACTCTAAACAGTTAATTTACTTTCAAGAGAGTTTTGGAAACATCCCTAAGTCCTCAAATGGCGTGTACGTTAATGGCCCTGCTCATCATGACTCAACTGTTGACATTTTTCGAGGAATGCAAATAGGGTCACACATTCAATCAGAGCTGGTTTCCACTGAAAGTGATGTTCTGGTTAAGCAGTTTGCAAGGCCTCCTCATGCAGAGCCATATGATTTTCAGTCAGTCTTGGCAGATCGTGTTGGCAGGCAGCTGCTGCGTGAACATGTTAAGATTAACCCATCCCTTGATCTCAGTCCCAACTCATCTTTGCTAAGCCGCCCAAATGGTTTATGA	2694	0.4406	MLTWWGKSSSKESKKKSNKESFFDTLHRKLKISSEGKLSTRSGGSRRNCNGTVSEKGDRSPTESRSPSPSKVARCQSFIERPHAQPLPLPGLHPSSVGRVDSEISISSKSRLEKVSKPSLFLPLPTPGCIRCKPNPADLDGDMITASVFSDCSADSDEPNSHNRSPLVADCETGIRTAAGSPSSSMPKDQPVVASQLNSAAVKKPGSILSNHTSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYSEVNFVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPKAGGTPIESQTGRVDDGKQQTHRLPLPPLSVSNSSPFSHSNSAATSPSMPRSPARADNPGSGSRWKKGKLLGSGSFGHVYLGFNSESGEMCAVKEVTLFSDDPKSMESAKQFMQEIHLLSRLQHPNIVRYYGSETVDDKLYIYLEYVSGGSIHKLLREYGQFGELVIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWFQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPYDRPSASELLDHPFVKLAAPLERPILVPEALDPVSGTTQGAKSLAIGQAKNLSTLDSDRLAVHSSRFLKINPHESEIHIPKNISCPVSPIGSPLLRSRSPQHRNGKMSPSPISSPRTASGASTPLAGGSGAIPFGNHSKQLIYFQESFGNIPKSSNGVYVNGPAHHDSTVDIFRGMQIGSHIQSELVSTESDVLVKQFARPPHAEPYDFQSVLADRVGRQLLREHVKINPSLDLSPNSSLLSRPNGL	897

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	740	780	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	1	98	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	36	73	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	369	396	-	-
	Vimu3g03017	897	ProSiteProfiles	Protein kinase domain profile.	409	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu3g03017	897	SUPERFAMILY	Protein kinase-like (PK-like)	407	666	IPR011009	-
	Vimu3g03017	897	ProSitePatterns	Protein kinases ATP-binding region signature.	415	438	IPR017441	GO:0005524
	Vimu3g03017	897	FunFam	Mitogen-activated protein kinase kinase kinase	407	689	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	9	35	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	284	411	-	-
	Vimu3g03017	897	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	58	673	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	198	252	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	198	222	-	-
	Vimu3g03017	897	CDD	STKc_MEKK1_plant	408	665	-	-
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	284	299	-	-
	Vimu3g03017	897	Pfam	Protein kinase domain	410	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu3g03017	897	MobiDBLite	consensus disorder prediction	744	774	-	-
	Vimu3g03017	897	SMART	serkin_6	409	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu3g03017	897	Gene3D	Transferase(Phosphotransferase) domain 1	406	681	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g03017	Vimu-Chr3	44119429	44125307	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g03017	2	886	MAP Kinase Kinase Kinase	AT1G63700	58.158	0.0	874

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vimu3g03017		Pkinase	2.3e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g03017	K20717		-	gmx:100797994	1529.61