LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g03016	ATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAAATTTTTTGGAATGGAAGAGGGAAGGGGGTCAAAGAGAGAACTTGGTTATGCAACGCTACCACATTACTGGACGGGACGATTACAAAAAATATTCAGGTTTAGGCCATATGGTTCAGAAGTTAGTTAACATATTGAAACAGATGGACGCAAAGGATCCTTTTAGGATTGACATGACTGACAAGCTTTTGGAAAAACTCTACAACATGGGCGTTATTCCAACCAGGCAAAGCATCACACTATGTGAACGCTTAACCGTGTCATCCTTCTGTAGACGTAGGCTCTCAACTGTTCTGGTGCGATTAAAATTTGCTGAACACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATAAGGGTTGGTCCAGAGACGGTGACAGACCCGGCTTTCCTTGTAACTAGGAACATGGAAGACTTCATTACATGGGTGGATTCATCCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAATTGGATGACTATGATTTAATGAATTAA	549	0.4044	MRKLKFHEKKLLKKVNFLEWKREGGQRENLVMQRYHITGRDDYKKYSGLGHMVQKLVNILKQMDAKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN	182

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g03016	182	SMART	s4_6	107	170	IPR002942	GO:0003723
	Vimu3g03016	182	Pfam	Ribosomal protein S4/S9 N-terminal domain	3	105	IPR001912	GO:0019843
	Vimu3g03016	182	Gene3D	-	107	182	IPR036986	GO:0003723
	Vimu3g03016	182	PANTHER	30S 40S RIBOSOMAL PROTEIN	5	178	IPR022801	GO:0003735\|GO:0015935\|GO:0019843
	Vimu3g03016	182	FunFam	U3 small nucleolar ribonucleoprotein IMP3	107	179	-	-
	Vimu3g03016	182	Pfam	S4 domain	107	153	IPR002942	GO:0003723
	Vimu3g03016	182	ProSiteProfiles	S4 RNA-binding domain profile.	107	173	-	-
	Vimu3g03016	182	CDD	S4	107	175	-	-
	Vimu3g03016	182	SUPERFAMILY	Alpha-L RNA-binding motif	27	175	-	-
	Vimu3g03016	182	SMART	Ribosomal_S4_2	3	106	IPR001912	GO:0019843

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g03016	63	148	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	34.483	3.59e-09	52.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g03016	K14560		-	gmx:100798516	353.984

Showing 1 to 1 of 1 entries