Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03008 AGCAGTGATATTGTCAACAAGACAGTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGATGTACTTGCACATCCTCTACAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCACACACAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTATTGAACGATCTAACTCAGGCATTACGAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCCAAGGTAATGCTGGGTCTGATCACAGCCGCAGCCTCTGCAACAGCATCGATAGTGTACATAGCACACAATGAAAACACAGGTGCCAATTGGTTTGCAATCTGCCAACAATACAACAACTTCTGTGAACGCATTTCGGGTTCTCTCATTGGCTCTTACATTGCTGTTGCTCTCTTCACAATACTAATCATCCTATCAGTTGTTGTAATCTCTCGAAACTTATGTGTGTTTCAACTGTTCTATGCCCTTTTTCTTGATATAACTTAG 600 0.4317 SSDIVNKTVCIQTCPFLSEVMMYLHILYRELSLMHNQLNAQQLVNHTQNQQDELTVEGGTISISSVYSQGLLNDLTQALRSAGLDLSQASISVQINLGKRANRGLSCGTSSPKVMLGLITAAASATASIVYIAHNENTGANWFAICQQYNNFCERISGSLIGSYIAVALFTILIILSVVVISRNLCVFQLFYALFLDIT 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03008 199 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 38 111 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vimu3g03008 199 NCBIfam plant integral membrane protein TIGR01569 113 179 IPR006459 -
Vimu3g03008 199 Pfam Casparian strip membrane protein domain 101 169 IPR006702 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03008 Vimu-Chr3 44055686 44057859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03008 50 120 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 60.563 7.12e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03008 - - vra:106770645 232.646