Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03007 ATGTCGCCGCCGGGGTTCCCTGCCGCTGGACCCTCCGATTTCTACGGCGCAGCAACCGGATTCCCTACTCAATCCATGGCAGTTCCACCCACCATCAACAACCACCCCGCCACCACTCACCAGTCTCTCTACCCATCCCAACCTTCAATTATGCTTCATCCCTCCTCCCACATGCCCAAACACCAAACATCCTCTCTCACCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCAGTAACACCATCAGCAACAATCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCGGTAAAGCCCAGAACTTTTCAACACAATCAATTCTCCACCTTCTCTCCTGAATTGTCTGCCTTACCGTCACACCGTTACGGGGCCTCCCTTCTCCACCACATTCGCCCTAACCCTGTCAACGCACAACCTGTCACGACTTCGATCCTGTCTCACACAAATTTCTCTCCGGTTCAAAGCAGGTTAGCCGCGACCCGTGAAATGGAGAAGAACTTGATAGACCACCGCCTCCAGGAGTTGGAAAAAGAGCTTCTAGAAGACAATGATGATGACCAAGGCGACGCTGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACGCTCCTCATCATCATCGCCCTCTTCCTCTACGACGTCGTCCAACTCCTCAGCAGAATCCATCAGTGTCATACAGTCCCTAACGGAGGTCGCGAAAGCGATTTCAGAAGGGAGAGTCGAGGTAGCCACGCAGATCCTTACCCGATTGTCGCAGAATTCGGATCAAGGCTTCGTAAATTGCATGGTTTCCGCGCTCAAATCGCGGATGAGTCATGTTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACACCGAGTCCACTCAGTTGCTATTTGAGCACTCGCTCTTCTTTAGGGTCGCGCTCATGGTCGCCAACATCGCAATCCTCGAATCTGCATTCGACGATAAAACAGAGAACCCCAAACTCTGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATACGCCAGCCTTCTCCACGAGCTCTCCTTGCGGCGAAAGGGTTCTCCAGCCGTCGTCAAGATAATCGCCGTTACGGAGAACAGCGCTGACGAGAGGATGAGTTCCGCAGGCGTGATGCTAGGAAGACTCGCAGAGCAACTCAGGATTGGTTTCAAATTCAAAGTGCTGACTCGGAGAATCGCCGAGTTGACTCGTGAGTCTTTGGGTTGCGACGCGGACGAGGTACTGGCGGTGAACTTCGCGTTCAGGCTTTACAAAATGCCCGACGAGAGCGTCTCCACGGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGGCACTCGCGCCGCGCGTGGTGACGCTGGTGGAGCAGGAGTCGAACACCAATACGGCGCCATTCGTGGCTCGCGTGGCAGAGTCATGCGCGTATTACGGCGCGCTGTTTGACTCGCTCGAGACTACAATGACACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAATCGGAAGATAGCAAACACGGTGGCATGCGAAGGAAGGGAGCGCGTGGAAAGGTGCGAGGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTGGCCGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTTAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAA 1809 0.534 MSPPGFPAAGPSDFYGAATGFPTQSMAVPPTINNHPATTHQSLYPSQPSIMLHPSSHMPKHQTSSLTGKRTLAEFQTHNLSNTISNNLLVSNNNNQLLTNYQFRSVKPRTFQHNQFSTFSPELSALPSHRYGASLLHHIRPNPVNAQPVTTSILSHTNFSPVQSRLAATREMEKNLIDHRLQELEKELLEDNDDDQGDAVSVVTTSEWSHTIQNLITPPKRSSSSSPSSSTTSSNSSAESISVIQSLTEVAKAISEGRVEVATQILTRLSQNSDQGFVNCMVSALKSRMSHVEYPPPVEELFGREHTESTQLLFEHSLFFRVALMVANIAILESAFDDKTENPKLCVVDFDIGNGKQYASLLHELSLRRKGSPAVVKIIAVTENSADERMSSAGVMLGRLAEQLRIGFKFKVLTRRIAELTRESLGCDADEVLAVNFAFRLYKMPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSWRIKMEEGLNRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVEKGGICFGWMGRTLTVASAWC 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03007 602 Pfam GRAS domain family 244 601 IPR005202 -
Vimu3g03007 602 ProSiteProfiles GRAS family profile. 234 602 IPR005202 -
Vimu3g03007 602 MobiDBLite consensus disorder prediction 211 238 - -
Vimu3g03007 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 222 595 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03007 Vimu-Chr3 44036287 44039875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03007 33 601 GRAS Transcription Factor Family AT5G52510 44.427 7.44e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu3g03007 GRAS 3.3e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03007 - - vra:106769615 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03007 3 44036287 44039875 Vimu3g03007 3 44036287 44039875 ECH
Vimu8g02174 8 28177601 28181157 Vimu3g03007 3 44036287 44039875 PCT