Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03000 ATGGCGGCAGGACTCTCCACCGCCGCGAACTTAAAGCCCTACAATCTGCTCCAACCTCAAATTTCTCTCCCTAAACCAAACCAATCGCTTTTCTTCCACCCCTTAAAATCTTTCCATCGAAGCACAATCCTTCGGCTAAGACGCCCTCGAAGAACCAGTGGCTTCTCCATTTGTGTCCTCACGGAGGATCCCAAACGGAACCTCCAGATCAAAACCAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGAATCCTGGATCTGTGTCTGCAGGAGTGGAAGAGAAATTGGCCAGAAAGAGGTCGCAGAGGTTCACTTACCTCGTGGCTGCTGTTATGTCCAGCTTTGGCATCACCTCCATGGCAGTCTTCGCCGTTTATTATAGATTCTCCTGGCAAATGGAGGGTGGAGATTTTCCTTGGTCTGAAATGTTAGGCACATTTTCCCTCTCTGTTGGAGCTGCCGTGGCGATGGAATTTTGGGCAAGATGGGCTCATAGAGCACTTTGGCATGCTTCCTTGTGGCACATGCATGAGTCGCACCATCGACCAAGAGAAGGACCATTCGAGCTTAACGATGTTTTTGCAATTGTTAACGCTGTTCCTGCGATCGCTCTTCTCTCATACGGTTTTTTCCACAAGGGTCTGGTCCCTGGCCTCTGCTTCGGTGCAGGCCTTGGAATCACGGTGTTCGGGATGGCCTACATGTTTGTCCACGATGGACTTGTTCATAAGAGATTCCCAGTGGGCCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAACTCCACCATACAGACAAATTCAACGGTGTGCCATATGGGCTGTTTTTGGGACCAAGGGAACTTGAAGAAGTGGGAGGGGTTGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATAAGGTCGGGTTCATGA 927 0.4951 MAAGLSTAANLKPYNLLQPQISLPKPNQSLFFHPLKSFHRSTILRLRRPRRTSGFSICVLTEDPKRNLQIKTNEEEEEEEEEEVNPGSVSAGVEEKLARKRSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDFPWSEMLGTFSLSVGAAVAMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIVNAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHTDKFNGVPYGLFLGPRELEEVGGVEELEKEISRRIRSGS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03000 308 Coils Coil 65 85 - -
Vimu3g03000 308 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 306 IPR045019 GO:0016491
Vimu3g03000 308 Pfam Fatty acid hydroxylase 154 281 IPR006694 GO:0005506|GO:0008610|GO:0016491
Vimu3g03000 308 MobiDBLite consensus disorder prediction 68 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03000 Vimu-Chr3 43998339 44000203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03000 1 224 Chloroplast and Mitochondria Gene Families AT4G25700 58.298 4.97e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03000 K15746 - gmx:100802778 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02193 8 28406480 28410391 Vimu3g03000 3 43998339 44000203 ECH
Vimu3g03000 3 43998339 44000203 Vimu3g03000 3 43998339 44000203 ECH
Vimu8g02193 8 28406480 28410391 Vimu3g03000 3 43998339 44000203 PCT