Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02990 ATGGATATCACAAGTTGTGGCTCAGTTATAAGTCATGTCATGCAGAAGAAGATGACACAGAGTGACTCTAACGCGACAGAAGGGCGCGTGAGGAAGCAGTACGTACCCTCGACGCTTCATTTTATGCAGTGGCCAATCAGATCCCAATGGTGTTTGTTAACAACTGTGAATGTGAGTGTGAGAATAGGACAGGAACTTTCCCACTCAGATCATGCCATCAGAATCATCATCCTTAACTTAGTCAGTGCTCCACCAACCCCTCTTGCTTCTTCCTCTCTCCTTTCTCTTTCCAGTAATCCCAAAAGTCAGCGCCATCTTTTCTGCCATATCTTCTTCCTCTCTCACCAACAAACAAAACCTACACTCATCTTTATCACCATACATATATTCAAAATGGACGAGGACTGGGATCTCTTTGCCATCGTCAGAAGCTGCCAATCAGCTACCAATACTTCCACCACAGCAATTCCAGAAACCACCACCAATACTACTTCATCTTCTCTCCTCACTTCCTTTCTCAAGGAAGACAGATATGATGCATTTTCCTTTCCCAATACTGTCCAACCCATTCCAAATGAATTTCACCAGCTACACCAATTCTTTTCACCCTTTAACCCCACCACCACCAACGCCACTACCCTTAGTGCTCCTCGCATCAATCCTAATTCCCCTTATTTTGCCCAACAGGAAACCCAGCAAATCAGTCACCACCTTCCCATTTTCCCTCATTTTCTGCCACAACCCTCCACTTCCAGTTTTAATAGATTCCCTGACCATCAACAACAGCAACAGAATCAACTACAGTTACTTCACAAACAGGAATTTCATACACCCCATAACAATTCACCCCCAGTTTCATCAAACGCACAACCTCAAACACCTAAATCAAGAAAGAGAAAAAGCCAACAGAAGAAAATGGTGTGCCAGGTAACCGCAGATAAACTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCGTATCCAAGATGTAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGCAACACTGAAACCGATGTCTTCATTGTTACGTATACCGGAGACCACTCGCATCCCCGGCCAACCCACCGGAACTCGCTCGCCGGAAGTACCCGAAGTAAAAATCCGACGACGAATCCGCCGCCTTTATCCGGGTCACTCTCCTTCCAATCCGCCCCCTTTTCTTCTTCTTCTTCTTCTCCGCCACTCTCTCCAACGTCGCCGTCGGAAGATCCACCGGAAGCCGGCGATGTTGAACCTGACCCGGACATGGAAACCGACATGGACGATGACAGTGACATCCGATGA 1344 0.4665 MDITSCGSVISHVMQKKMTQSDSNATEGRVRKQYVPSTLHFMQWPIRSQWCLLTTVNVSVRIGQELSHSDHAIRIIILNLVSAPPTPLASSSLLSLSSNPKSQRHLFCHIFFLSHQQTKPTLIFITIHIFKMDEDWDLFAIVRSCQSATNTSTTAIPETTTNTTSSSLLTSFLKEDRYDAFSFPNTVQPIPNEFHQLHQFFSPFNPTTTNATTLSAPRINPNSPYFAQQETQQISHHLPIFPHFLPQPSTSSFNRFPDHQQQQQNQLQLLHKQEFHTPHNNSPPVSSNAQPQTPKSRKRKSQQKKMVCQVTADKLSADLWAWRKYGQKPIKGSPYPRCSSSKGCMARKQVERSNTETDVFIVTYTGDHSHPRPTHRNSLAGSTRSKNPTTNPPPLSGSLSFQSAPFSSSSSSPPLSPTSPSEDPPEAGDVEPDPDMETDMDDDSDIR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02990 447 SMART WRKY_cls 316 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02990 447 MobiDBLite consensus disorder prediction 375 416 - -
Vimu3g02990 447 MobiDBLite consensus disorder prediction 331 447 - -
Vimu3g02990 447 SUPERFAMILY WRKY DNA-binding domain 313 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02990 447 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 135 438 IPR044810 GO:0003700
Vimu3g02990 447 MobiDBLite consensus disorder prediction 276 296 - -
Vimu3g02990 447 Gene3D WRKY domain 299 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02990 447 MobiDBLite consensus disorder prediction 276 306 - -
Vimu3g02990 447 Pfam WRKY DNA -binding domain 318 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02990 447 ProSiteProfiles WRKY domain profile. 311 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02990 447 MobiDBLite consensus disorder prediction 426 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02990 Vimu-Chr3 43943056 43944804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02990 295 436 WRKY Transcription Factor Family AT5G52830 58.503 7.54e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g02990 WRKY 2.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02990 - - gmx:100792164 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02244 8 29196482 29197057 Vimu3g02990 3 43943056 43944804 ECH
Vimu9g00234 9 2836959 2837582 Vimu3g02990 3 43943056 43944804 ECH
Vimu6g00589 6 7112746 7114423 Vimu3g02990 3 43943056 43944804 ECH
Vimu7g02426 7 20778539 20779187 Vimu3g02990 3 43943056 43944804 ECH
Vimu11g02887 11 48736625 48741947 Vimu3g02990 3 43943056 43944804 ECH
Vimu3g02990 3 43943056 43944804 Vimu3g02990 3 43943056 43944804 ECH
Vimu8g02244 8 29196482 29197057 Vimu3g02990 3 43943056 43944804 PCT