Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02987 ATGGAACACCAATCATCACCACCATCGCCACCGCCTCCGCCATCACCTCCGCCGCCAACACAACCACCCAAAACCTACACACTAACCGCCACCTCAATATGCTACACCAAATCCTCCTCCTCCAAACTTCCTCCCTTCTTCAACCATTGCACCACCACCCCTCCAGCTTACATCCTCAAGGACGTCTCCCTCACCGCCCACCCTTCCCAAATCCTCGCCGTCGTTGGCCCCAGCGGCGCCGGGAAGTCCACCCTCCTGGACATTCTCGCCGCCCGAACCCTCCCCTCCCACGGCACCCTCTCTGTCAATTCCTCCCCTCTCCTCCCCTCCTCCTTTCGCAAGCTCTCCTCCTACGTCCCCCAACACGACCACTCCCTCCCTCTCCTCACCGTCTCCGAAACCTTCCTCTTCGCCGCCACCCTCCTCAAACCCTCCGCCCCCGACCTCCGTGCCCTCGTCTCCCACCTCCTTTCCCAACTGCGCCTCTCCCATCTTGCCCACACGCGCCTCGCCCACGGCCTCTCCGGCGGAGAACGAAGAAGGGTCTCCATCGGTCTCAGCCTCCTCCACGATCCTGCCGTTTTACTCCTAGACGAACCCACTTCGGGGCTTGACAGCACTTCCGCCTTCAAAGTCATGCAGATTCTCAAACAAACTTGCCTCTCTCGCAACAGAACCATCATCCTCTCCATCCACCAACCCAGCTTCAAGATCCTCTCCTGCATTGACAGGATCTTGCTGCTTTCCAAAGGAGCCGTCGTTCATCATGGAACCGTTGCCACCTTACAGGGATTCTTGCATTCCAATGGCTACACCGTCCCTCAGCAACTCAATGCCTTGGAATACGCCATGGAGATTTTGAATGAGGTTAAGCCTCTCACTCCACCCAGTCTTCCCGAGTCGCCCGAAAGTTCAAGTTCAAGTTCAGTAAATTTGGTTCCTGGTGGTGGACGAACAGGGAGCAGTAGAGAGAGCATCATGTATAAAAGCTCTAGGGTGCACGAGATTTTCACTCTTTACGTCAGATTTTGGAAGATTATTTACCGAACAAGGCAACTTCTTCTGACCAACACTGCCGAAGCGCTTCTCGTGGGGCTTGTGTTGGGAACTATTTATATCAACATAGGTTTTGGTAAAGAAGGGATCGAGAAAAGGTTTGGTTTGTTTGCTTTCACTCTCACGTTTCTGTTATCTTCCACCACCGAAACCCTTCCCATCTTCATCAACGAGAGGCCTATCATATTAAGAGAAACTTCAAGTGGGGTTTATAGGCTCTCTTCTCATCTCATTGCAAATACGCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTTATATATTCTATCCCGGTTTACTTCTTAGTTGGCCTCTGTGCTTCATGGCTTTCTTTTGCTTACTTTGTTCTGGTCATTTGGGTCATAGTTCTCATGGCAAATTCCTTCGTCCTCTTCTTGAGCTCTCTTGCACCCAACTACATTGCCGGAACTTCCCTCTTGACGGTGCTTCTGGCAGCGTTTTTTCTGTTCTCTGGTTACTTTATCTCCAAGGATAGCTTGCCCAAGTACTGGCTTTTCATGCACTTCTTGTCCATGTACAAATACGCTCTTGACGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGTCAAAGTGTTTGATATGGTACCAAGAGAATGAACAGTGCATGATCACCGGCGCTGACGTGCTACAGAAGAGAGGGCTCAAAGAGAGTGAAAGGTGGACCAACGTGTACATCTTGATCGGCTTCTTTGTACTGTATCGTTTGCTTTGCTTCTTGGTTTTGATTCGGAGGGTGTCGAGATCCAAAACATAA 1833 0.5112 MEHQSSPPSPPPPPSPPPPTQPPKTYTLTATSICYTKSSSSKLPPFFNHCTTTPPAYILKDVSLTAHPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLSVNSSPLLPSSFRKLSSYVPQHDHSLPLLTVSETFLFAATLLKPSAPDLRALVSHLLSQLRLSHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCLSRNRTIILSIHQPSFKILSCIDRILLLSKGAVVHHGTVATLQGFLHSNGYTVPQQLNALEYAMEILNEVKPLTPPSLPESPESSSSSSVNLVPGGGRTGSSRESIMYKSSRVHEIFTLYVRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFGKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRLSSHLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMHFLSMYKYALDALLINEYSCLVSKCLIWYQENEQCMITGADVLQKRGLKESERWTNVYILIGFFVLYRLLCFLVLIRRVSRSKT 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02987 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 595 - -
Vimu3g02987 610 FunFam ATP-binding cassette transporter 48 268 - -
Vimu3g02987 610 Pfam ABC-2 type transporter 232 290 IPR043926 GO:0140359
Vimu3g02987 610 MobiDBLite consensus disorder prediction 294 323 - -
Vimu3g02987 610 MobiDBLite consensus disorder prediction 1 24 - -
Vimu3g02987 610 Gene3D - 46 291 IPR027417 -
Vimu3g02987 610 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g02987 610 MobiDBLite consensus disorder prediction 300 323 - -
Vimu3g02987 610 SMART AAA_5 68 252 IPR003593 GO:0016887
Vimu3g02987 610 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 275 IPR003439 GO:0005524
Vimu3g02987 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 266 IPR027417 -
Vimu3g02987 610 Pfam ABC-2 type transporter 335 544 IPR013525 GO:0016020|GO:0140359
Vimu3g02987 610 Pfam ABC transporter 59 202 IPR003439 GO:0005524
Vimu3g02987 610 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02987 Vimu-Chr3 43919593 43922215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02987 52 258 Calmodulin-binding Proteins AT2G36910 28.125 1.04e-14 75.9