Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02981 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTGGGATTGGGTGTAGGACTTGGATTGAGTACAGGACAGGCTGTTCAAAAATGGGTGGGAGGGAGTTGTGAATCAGATGAGATTTCTGGGGAGCAAATTGTGCTGGAGCTGAACAACAAAGTCATTGATGGGAAGAACAGCAAAACCACATTTGATGAGTTTCCTTATTACTTAAGTGAAAGAGTCCGATTTTCGTTAACAAGTGCTGGATATGTTTATTTGAAACAAGACTTTTCCAAGCACATGAGGAACCTTTGTCCAGCAAGCAGAGCTATGTTGCTTTCTGGACCTGCAGAACTTTATCAGCAAAAGGTTGCCCAAGCTTTAGCTCAGTGCTTTGGATCGAAGTTACTGTTGCTAGACATAATTGACTTCTCCTTGGAGATGCAGAGGAAATACGGATGTCCCAGAAAAGAACCGTATTTTAAAAGGTCCATTTCTGAGGTCACTTTGGAGCGAGTGTCGGGTTTGTTTGGATCCTTTCCAATCCTCTCTTCAACTAGCAGAACCAGAGGTACACTACTTCGACAGACTAGTGAAATTGAAAATTCCAGCAATCCTCTGAAACTTTGTAGGAATGCCTCTAGTGCATGTGATACGATTAGCTCTTCTCAATGTGATCAATCAGATCCAGCTCCTTTGAAGGGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAATCACTTTATAAGGTCTTGGTTTCTATCTCGGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAGCTAATAAAGAAACTTTCAGGACCAGTACTAATACTCGGTTCGCAGATATTTGATTATGAAAATGATCCCGAAATTGATGACAAGCTCACTATGTTATTCCCTTACATCATTGAGATCCAACCACCTCAAAATGACAGCCATCTTGCAAGCTGGAAAACCAAACTGAAAGAGGACACGAAAACAATTCTGTTTCAAGATAGCAGAAACTATATTGCTGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCCGTCTGCCATGCTGACACTATGCTACTCAGTAGTTGCATTGAAGAGATTGTGGCAGCAGCAGTTTCTCACCACCTAAAGAGGACTAAAGATCCAGAATACCGAAATGGAAAATTAGTTATATCAGCCAAGAGTTTGTCCTATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACCAAAGATTCAAACAAGAAAGATGGCGACAGTAATGCTCCTGCAGAGGATGTTCCTCCTGACAACGAGTATGAGAAGCGCATGAGAGCAGATGTTGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATTAAAGAAATACTTCAAGATGAAGTTCTACTTCCCCTCAGAAGGCCAGATTTATTCAATGGTGGGCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATATCGACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCTGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGTCAACGGACTAAATCTGGGGAGCATGAGGCGATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGGCTATTGTCAAAACCTGGTAAGCGAATTCTGGTTCTTGCTGCAACTAACAGGCCATATGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTACTGAAAACAGGGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAAAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCTTATCGACCTGTTAGAGAGCTACTACGACAGGAAAGGATTAAGGAAAATAAGAAAAAGGAGGCAGCAGTTCAAAGCTCAGAAAGTGCATCTGATGCTAAAGAAGATAAAGAAAACCGAGTTATTACTTTGAGACCTATTAACATGGATGACATGAGACAGGCAAAGACTCAGGTGACTGCTAGTTTTGCAGCAGAAGGATCAATAATGAGTGAGCTTGAGGAGTGGAATGATTTATTTGGAGAAGGAGGTTCAAGGAAGAAGAAGCAGGAGCAGCTTACTTATTTTCTTTAG 2349 0.4066 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGEQIVLELNNKVIDGKNSKTTFDEFPYYLSERVRFSLTSAGYVYLKQDFSKHMRNLCPASRAMLLSGPAELYQQKVAQALAQCFGSKLLLLDIIDFSLEMQRKYGCPRKEPYFKRSISEVTLERVSGLFGSFPILSSTSRTRGTLLRQTSEIENSSNPLKLCRNASSACDTISSSQCDQSDPAPLKGTSGFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGPVLILGSQIFDYENDPEIDDKLTMLFPYIIEIQPPQNDSHLASWKTKLKEDTKTILFQDSRNYIAEVLAASDIDCDDLNSVCHADTMLLSSCIEEIVAAAVSHHLKRTKDPEYRNGKLVISAKSLSYVLSLFQESESNSETKDSNKKDGDSNAPAEDVPPDNEYEKRMRADVVPAKEIGVRFEDIGALDDIKEILQDEVLLPLRRPDLFNGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSTENREMILKTLLAKEKYENIDFKELSIMTKGYTGSDLKNLCTAAAYRPVRELLRQERIKENKKKEAAVQSSESASDAKEDKENRVITLRPINMDDMRQAKTQVTASFAAEGSIMSELEEWNDLFGEGGSRKKKQEQLTYFL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02981 782 Gene3D - 640 742 - -
Vimu3g02981 782 Pfam ATPase family associated with various cellular activities (AAA) 508 637 IPR003959 GO:0005524|GO:0016887
Vimu3g02981 782 MobiDBLite consensus disorder prediction 424 455 - -
Vimu3g02981 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 696 IPR027417 -
Vimu3g02981 782 SMART AAA_5 504 641 IPR003593 GO:0016887
Vimu3g02981 782 MobiDBLite consensus disorder prediction 427 455 - -
Vimu3g02981 782 Pfam AAA+ lid domain 660 696 IPR041569 -
Vimu3g02981 782 MobiDBLite consensus disorder prediction 701 726 - -
Vimu3g02981 782 Gene3D - 467 749 IPR027417 -
Vimu3g02981 782 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 781 - -
Vimu3g02981 782 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 467 642 - -
Vimu3g02981 782 ProSitePatterns AAA-protein family signature. 611 630 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02981 Vimu-Chr3 43877742 43884402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02981 468 710 Calmodulin-binding Proteins AT3G56690 40.486 5.11e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02981 - - gmx:121172906 1202.58