Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02973 ATGCCAACATGTTTCATTTTCTTTGATCTCAATCCAAATAGAGACAGTCCTGTATCCCAAGATGCAACATTGGAGCTTGACACCACTGGCAACCTTGTTCTCGTGGATGGAGACATCACAGTGTGGACCTCAAACACCTCAGGTTCTGGTGTACAAGCAGCAGTCATGGCAGAATCCGGCAACTTCATCCTCCAGAACGCCGACAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCCGACACTCTCCTCCCCAACCAGCTTCTAACAGTGTCTTCAGAACTAACTTCATCTAAGTCTTCTTCTCATGGTGGCTACTATTCTCTCAAAATGCTTCAACAGCGTACTTCCTTAAGCCTTGCTCTCACTTACAATCTCCTTGAGACTTACCAAGCCTCAGATGAATCATACACCAACTATTCCTATTGGAATGGCCCTGATATCTCCAATGTGACTGGGGAGGTTATAGCAGTTTTAGACCATGCTGGGAGCTTTGGGATTGTGTATGGAGACTCTTCTGACGGTGCAGTGTATGTGTACAAGAATGATGGTGACGATGCAGGCTTGCCTTCTGCAGTTAATCAATCTGCACCATCGACTGTTCTCAGGAGACTAACACTGGAAAAGAATGGCAATCTGCGGTTGTATCGATGGGACGAAGTGAATGGCTCAAGGCAGTGGGTGCCACAGTGGGCAGCAGTTTCAAATCCATGTGATATTGCTGGAGTTTGTGGCAATGGGGTTTGCAATTTGGATAGAAGTAAGACAAAAGCCACTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGGAGGGATGGCCTGTGCTATGAGAATTCATCTCTTGTGGGAAAATGCAATGGCAAGCATGAAAACCTGACATCCCAGTTTAGGATTTCGACGGTGCAGCAAACCAACTATTATTTTTCTGACATTTCTGTTATAGCTAACTACAGTGATATTTCTAATGTGTCAGCATGTGGGGATGCTTGCTTGTCAGAATGTGATTGTGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGAGCATATTGTTGGGTGTTGAGGAGCTTAAGTTATGGTGGTTTTGAAGATACAGGCTCAACTTTGTTTGTGAAAGTAAGAGCAAATGGGTCGTGGACTCCAGAAGGCCAAGGAGGGTCTAATAATAGCTCTTCTGGTGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCCACTGTTGTGAGCATGGTAGTTCTCATTGCTTTGCTGAGTTTATTACTGTATTACAGCGTTCACAGGAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACATACCGTGATTTGCAGATCAGGACATGCAACTTTTCACAGCTGCTAGGAACAGGTGGGTTTGGGAGTGTATATAAAGGAAGCCTGGGAGACGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCTCATGGAGAGAAGGAATTCATCACTGAAGTAAACACTATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGTTCTGAGGGGTCACATAGGCTTCTGGTTTATGAGTTCATGAAGAATGGGTCATTGGATAAGTGGATCTTCCCTTCGTATCAAGGGCGAGATAGATTGTTGGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCACGAGCAATGCAGGGATCGGATAATACACTGTGACATAAAACCGGAGAATATATTGGTGGATGACAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCGAAATTGATGGGAAGGGAGCATTCTCATGTGGTGACAATGGTGAGAGGCACAAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTCAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGTAGGAGAAATCTTGACATGTCCTTTGGTCCTGAGGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAACAATTAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTATCCATGCGACCAACAATGGGGGAAGTGGTGAGACTTCTGGAAGATACGGTGGACATTAATATGCCACCGATGCCACAGACAGTGCTAGAGTTAATTGAGGAAGGCTTAGACCATCAATTCCACAATGTCACCGAGGTAGTCTTGAAAATGCAACACAAAAACCTCAACAACCTAGGAATTTGTCTTTCGTGTGATCTGAGTATATGGGAAAATCATGGAAGGGGAGGGTCTCCGTTCACAATCAGCACCGAAGATCGGAGACGACGCACGTGCAAACATGACTTCACACCGCCACCGCAAACCCTCTCCCAATCCAGCACGATTCTATTTCCCGCGACGATGGAGAAGATGCGTCACGCAGAGGAGCTGGTGAGGGAGTTTCTGGTGTTCCGCGGTTTCACCAACACCCTCGAATCATACGAGACCGAATTGCGCACCGACATCGGCAAGGGCTTCGAGGTCGACAAGATCCTAGACCTAATCTTCTCCGTCTACGTACCAAAGTTCCACGCCGATAAGCTTGTGGCGCTTCTTGGGTTCTTCAAGCACTACCTCTCTTCCTCCTCCGACACGCCGCTGGTCTCCACGCTCTTGAAGTTGGAGGCTTCTATTCTACGCTTTTATGTCGTCCACGCCGTGCAGTGCAACCGCAACGACAAGGTGGTTGAGTTCTTCGCGCTCTACGGCTCCGAATTGTTGCAGAGGTCGCAAGATTGGACTCAATGGTTCGCAATTCCTTATAAGAAGAACCCACACTTGGATCCTGAGTTTCGGGTTTTTTTCTCCAAGGAGTGGTATCAAGCTTTGCATCTTTCTTCTAGAAACTTCTTCAGCGAGATTTTCAATGCTACTCATATCCTTCACGTTAATTCTGTTCGTAGTTCTATATTGGTTAGTTCGGAGATGAATGCTACTAATGTACTCAAAAGAGATATCGTACATTTAAATCTGAAGTTGTCCCAACTTCAGGCTTTGCTTGATGAGAAAGAGGCACAGTTACGTCAATTTAGAAGTATGGATGGGAGTACTGGTTCACAAAGCAATTTACGTGAAGAAACTGCTCATACGGTGAAAAATTCTCCGGATGTTTTTCCAACTACCACCTCACAAATAGGTCAAATCGAGGTTATCCAAGATTTAGCAGTGGGTGAACTCGGAAATATTCATTCCGAGTTGATTGGTTCCACATCTTGTGATGATTCAGCTTTCCTATCTGAAGACTGTCTGAGGAATGGCGGAGCTGACGATGCCAGTCTAAAAGGTAACGCAGTGTCTATAGATGCAGACAGTCATGCTTCAATACCACTCACTCTTTTAATTCTTTAA 3477 0.4498 MPTCFIFFDLNPNRDSPVSQDATLELDTTGNLVLVDGDITVWTSNTSGSGVQAAVMAESGNFILQNADNHPVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSHGGYYSLKMLQQRTSLSLALTYNLLETYQASDESYTNYSYWNGPDISNVTGEVIAVLDHAGSFGIVYGDSSDGAVYVYKNDGDDAGLPSAVNQSAPSTVLRRLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCTCLPGTSKVGRDGLCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSDISVIANYSDISNVSACGDACLSECDCVASVYGLNEERAYCWVLRSLSYGGFEDTGSTLFVKVRANGSWTPEGQGGSNNSSSGGMGSAKEKAVIIPTVVSMVVLIALLSLLLYYSVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDDNFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGPEDFFYPGWAYKEMTNGSTIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDTVDINMPPMPQTVLELIEEGLDHQFHNVTEVVLKMQHKNLNNLGICLSCDLSIWENHGRGGSPFTISTEDRRRRTCKHDFTPPPQTLSQSSTILFPATMEKMRHAEELVREFLVFRGFTNTLESYETELRTDIGKGFEVDKILDLIFSVYVPKFHADKLVALLGFFKHYLSSSSDTPLVSTLLKLEASILRFYVVHAVQCNRNDKVVEFFALYGSELLQRSQDWTQWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSSRNFFSEIFNATHILHVNSVRSSILVSSEMNATNVLKRDIVHLNLKLSQLQALLDEKEAQLRQFRSMDGSTGSQSNLREETAHTVKNSPDVFPTTTSQIGQIEVIQDLAVGELGNIHSELIGSTSCDDSAFLSEDCLRNGGADDASLKGNAVSIDADSHASIPLTLLIL 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02973 1158 Pfam S-locus glycoprotein domain 199 265 IPR000858 GO:0048544
Vimu3g02973 1158 SMART serkin_6 458 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02973 1158 Coils Coil 1029 1056 - -
Vimu3g02973 1158 Gene3D Phosphorylase Kinase; domain 1 422 533 - -
Vimu3g02973 1158 CDD B_lectin 13 79 IPR001480 -
Vimu3g02973 1158 CDD STKc_IRAK 464 731 - -
Vimu3g02973 1158 SMART blect_4 5 79 IPR001480 -
Vimu3g02973 1158 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 534 740 - -
Vimu3g02973 1158 ProSiteProfiles Bulb-type lectin domain profile. 1 77 IPR001480 -
Vimu3g02973 1158 Gene3D - 10 109 IPR036426 -
Vimu3g02973 1158 Pfam Protein kinase domain 461 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02973 1158 Gene3D Transferase(Phosphotransferase) domain 1 534 746 - -
Vimu3g02973 1158 FunFam serine/threonine-protein kinase PBS1-like 426 533 - -
Vimu3g02973 1158 ProSiteProfiles Protein kinase domain profile. 458 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02973 1158 SUPERFAMILY Protein kinase-like (PK-like) 436 730 IPR011009 -
Vimu3g02973 1158 Pfam D-mannose binding lectin 13 94 IPR001480 -
Vimu3g02973 1158 SUPERFAMILY alpha-D-mannose-specific plant lectins 13 94 IPR036426 -
Vimu3g02973 1158 PANTHER OS07G0415500 PROTEIN 17 742 - -
Vimu3g02973 1158 ProSitePatterns Protein kinases ATP-binding region signature. 464 487 IPR017441 GO:0005524
Vimu3g02973 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02973 Vimu-Chr3 43805050 43810667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02973 441 740 Receptor kinase-like Gene Family AT5G20050 45.541 8.25e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu3g02973 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02973 - - pvu:PHAVU_007G0773000 1380.54