Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02964 ATGGAGAAGTTTTGCAGTATGTTTTGTGGGGAAGCTGGTTGTTCAGTGACAGGAGGGAATCCTTGCATTTGTGATTTTGAGTTTCTGAAAGATCCATCCTCGTGTATCAACCATTTGCTATTCATTTGCATTGATGTGTTGCTGCTGATCATGATCTCATTTGCAATCCTCATGAAGTCATCAGAGAAACCATCTCAGGGTGTAATCAGAGTGCAACATTATTCCAAATTGCAGCTAGTGTCTGCCATAGCCAATGGCTCTCTGGGGCTGATACATCTGTGCTCAGGCATTTGGCTTTTAGAGGAGAATCTGAGGAAGGCACAAACTGTTTTTCCTCTTGATTGGTGGATGCTAGAATTCATTCAGGGATTCACTTGGTTGCTGCTGGGTTTTACAATAAGTCATCAGCTGAAAAAACTTCCAAGAGCATGGTTATTTATGTTTTCTATTGTAATCTTCTTGGTTTCTGGTATTCTCTGTGTTTTATCCTTGATTTATTCAATTGATAACAGAAAACTATCCCTGAAAATAGTTCTAGATGTTTTATCTTTTCCAGGGATAATTCTGTTGCTATTATGCATTTACAAGGAATCTAAGTACAGAGACACTGAGAGAGAAAATAATGGAAGTCTGTATACCCCTTTAAAAGAAGAGACCAATAAAGTTGACTCTGATAGTTATGTCACACTATTTTCAAAAGCTGGATTCTTCAGCAGGATGTCATTTTGGTGGATGAATCCATTGATGAAAAGGGGTAAGAAGAAAACACTTCAGGAAGAGGATATTCCAAAGTTGAGCGAAGCAGATCAAGCAGGAAGTTGTTATTTTCTGTTTCTAGACCAATTGAACAGACAGAAACAGAAAGAACCATCATCGCAGCCATCAGTTTTGACGACAATATTTATGTGCTACTGGAAGGAGATTTTGATATCAGGATTATTTGCTTTGTTAAAGGTAATCACTCTCTCTTCTGGCCCTTTGCTTCTGAATTCCTTTATATTGGTTGCTGAGGGTCATGGGAGTTTCAAATATGAAGGCTATGTATTGGCCATATCACTGGTCTTCACAAAGGTCATAGAATCCTTGTCCCAAAGGCAGTGGTACTTCCGCACCAGACTCATTGGTATTAAAGTTAGATCATTGCTCATTGCCGCAATTTATAAAAAGCAACTAAGGTTGTCTAATGCTGCAAGATTGACGCACTCTGGTGGTGAGATAATGAACTATGTGAATGTGGATGCCAATAGAATTGGAGAGTTTCCCTATTGGTTTCACCAAACGTGGACAACAAGCGTTCAACTATGTATTGCATTGGTGGTGCTTTTCCGTGCTGTTGGACTGGCAACATTTGCCTCATTGGCGGTGATAGCTCTAACTGTGCTCTGCAATACTCCACTTGCTAAGTTGCAGCATAAGTTTCAGCGAAAACTTATGATGGCACAAGATGAGAGATTGAAGGCCACTTCCGAGGCTCTTGTGAGCATGAAGGTGTTGAAGCTATATGCGTGGGAAACCAATTTCAGAAATGCAATTGAAAAGTTGAGGGATGTGGAACTAGAAAGGTTGTCTGTGGTGCAATTGAGAAGGTCATATAGCAACTTTCTCTTTTGGGCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTGCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTAGCAACTTTGCGCCTTGTTCAAGATCCTATTAGAACAATTCCTGATGTAATTGGAGTGGTCATTCAAGCAAAAGTTGCATTTGCAAGGATTGTAAAATTTCTTGAGGCACCTGAACTGCAAAGTGAAAATGCTAGGAGAGGTTTTAGTGACAATAAGAGGGGCTCAATTTTGATCAATTCCGCTAACTTTTCATGGGAAGATAACTTGTCAAAACCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGAAAAAAGTAGCAATCTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTTTTAGCAGCAATTCTCAGAGAAGTTCCTATTACTCGTGGAACTATCGAAGTTCATGGAAAATTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATACGTGAGAATATATTGTTTGGAGCAGCCATGGATGCTGAAAAATATCAAGAAACACTCCATAGGTCTTCACTGATGAAGGACCTTGAGTTGTTTCCACACGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGCGCTCTTTATCAGAATGCTGATATTTATCTCTTGGATGATCCATGCAGTGCTGTTGATGCACACACTGCTACAAACTTGTTCAATGATTACATCATGGAAGGACTTGCAGGGAAGACAGTCTTGCTCGTGACTCATCAAGTTGACTTTCTTCCAGCCTTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCATAGAAGCTGCTCCTTATCATCATCTGTTGAGTTCAAGCCAGGAATTTCAAGACCTTGTTAATGCTCACAAGGAGACCGCTGGTTCTGAGAAACTAGTGGATGTTACTTCTTCTAGTAGAAACTCAAATACTGTTACAGAGATTAGTAAAATAGAAATGGAGAAGCAGTGTGAAACATCAGAAGGCAGTAAATTAATAAAGAAAGAGGAGAGGGAGAAAGGAAACAGAGGGTTCAAACCTCACTTGCAGTATCTAACTCAGAACAAAGGATATATATACTTCTCTGTGGCTTCTATTTCTCACCTTATTTTCACAATTGGCCAGATATTTCAGAACTTATGGATGGCTTCCAGTGTTGACAACCCTTATGTCAGCACATTGAAATTGATTGCAGTGTACTTGTTGATTGGGTTTATTTCTGCATGTTTCTTGTTCATCAGAAGTCTTGTTGTGGTTGCTATGAGTATTCGAACATCAAAATCTTTACTTTTACAGCTACTGGACTCCCTTTTTCGTGCACCTATGTCATTTTATGACTCCACACCTTTGGGAAGGATTCTTAGTAGGGTCTCCTCAGATCTAAGCACTGTGGATCTCGATGTCCCATTTGGCCTTATTTTTGCTGTGGGAGCTACTGCAACTTGTTATTCAAATCTTGCAGTTATAGCAGCCATTACTTGGCAAGTCCTGTTTATCTCTGTACCGATGCTTTACATAGCATTTCGCTTGCAGAGATATTACTATGCCACTGCAAAAGAATTGATGAGGATGAATGGCACGACAAAATCTTATGTGGCTAATCATCTTGCCGAATCTATTGCTGGAGTTGTGACAATAAGGGCTTTTGAAGAGGAGGATCGTTTTTTTGCCAAGAATCTTGATATGATTGATGTCAATGCCAGTCCTTACTTTCATACCTATGCAGCAAATGAATGGTTGATGCTAAGGTTAGAAACAATAAGTGCAGTGGTTTTTGCATCTGCTGCACTCTGCATGGTGGTACTTCCACCTGGGACTTTCAACTCTGGGTTTATTGGCATGGCTCTCTCATACGGCCTTTCATTAAACTCTTCCCTAGTGTTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATCATATCAGTGGAGAGGCTAAATCAATACATGCATATACCAAGTGAGGCCCCAGAAGTGATAGAAGGAAATCGTCCACCTACTAATTGGCCAGCTGAGGGAAAAGTAGAAATTCATGATTTGAAGATAAGGTACCAGCCTGATTCACCACTAGTACTGCGTGGGATCACATGCACGTTTGAAGGAGGGCACAAGATTGGTGTTGTTGGCAGAACAGGAAGTGGAAAGTCCACTCTTATAGGGGCCCTATTCCGTCTGGTAGAACCTGCTGGTGGGAAAATAGTAGTTGATGGCATAGACATTTGTTCTATTGGACTTCAGGATTTGAGGTCACGCTTTGGTATTATACCTCAGGATCCTACTCTTTTCAATGGAACAGTCAGATACAATTTGGACCCCTTATCTCACCACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAATGCCAGCTGAGAGAAGTTGTTGAAGAGAAAGAAGAGGGGTTGGATTCTTCAGTTGTTGAGGCTGGGGCAAATTGGAGCATGGGGCAACGACAGTTATTCTGCTTGGGGCGTGCCCTTTTGAGGAGAAGTCGGATACTAGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTACAGAAAACAATTAAGGCAGAGTTTGCAGATTGTACTGTAATCACTGTAGCCCACAGAATACCAACCGTGATGGACTGCACTAAGGTTGTGGCCATCCATGAAGGAGAATTGGTGGAATATGACGACCCAATGAAGTTGATGAAAAGAGAAGAATCACTGTTTGGACAGCTTGTGAAGGAATACTGGTCTCATTTGCAGTCTGCAGAATCACACTAA 4437 0.4093 MEKFCSMFCGEAGCSVTGGNPCICDFEFLKDPSSCINHLLFICIDVLLLIMISFAILMKSSEKPSQGVIRVQHYSKLQLVSAIANGSLGLIHLCSGIWLLEENLRKAQTVFPLDWWMLEFIQGFTWLLLGFTISHQLKKLPRAWLFMFSIVIFLVSGILCVLSLIYSIDNRKLSLKIVLDVLSFPGIILLLLCIYKESKYRDTERENNGSLYTPLKEETNKVDSDSYVTLFSKAGFFSRMSFWWMNPLMKRGKKKTLQEEDIPKLSEADQAGSCYFLFLDQLNRQKQKEPSSQPSVLTTIFMCYWKEILISGLFALLKVITLSSGPLLLNSFILVAEGHGSFKYEGYVLAISLVFTKVIESLSQRQWYFRTRLIGIKVRSLLIAAIYKKQLRLSNAARLTHSGGEIMNYVNVDANRIGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVIALTVLCNTPLAKLQHKFQRKLMMAQDERLKATSEALVSMKVLKLYAWETNFRNAIEKLRDVELERLSVVQLRRSYSNFLFWASPVLVSAASFGACYLLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQSENARRGFSDNKRGSILINSANFSWEDNLSKPTLRNINLEVRPGKKVAICGEVGSGKSTLLAAILREVPITRGTIEVHGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYQETLHRSSLMKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPCSAVDAHTATNLFNDYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGEIIEAAPYHHLLSSSQEFQDLVNAHKETAGSEKLVDVTSSSRNSNTVTEISKIEMEKQCETSEGSKLIKKEEREKGNRGFKPHLQYLTQNKGYIYFSVASISHLIFTIGQIFQNLWMASSVDNPYVSTLKLIAVYLLIGFISACFLFIRSLVVVAMSIRTSKSLLLQLLDSLFRAPMSFYDSTPLGRILSRVSSDLSTVDLDVPFGLIFAVGATATCYSNLAVIAAITWQVLFISVPMLYIAFRLQRYYYATAKELMRMNGTTKSYVANHLAESIAGVVTIRAFEEEDRFFAKNLDMIDVNASPYFHTYAANEWLMLRLETISAVVFASAALCMVVLPPGTFNSGFIGMALSYGLSLNSSLVFSIQNQCTLANQIISVERLNQYMHIPSEAPEVIEGNRPPTNWPAEGKVEIHDLKIRYQPDSPLVLRGITCTFEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDICSIGLQDLRSRFGIIPQDPTLFNGTVRYNLDPLSHHSDKEIWEVLGKCQLREVVEEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIKAEFADCTVITVAHRIPTVMDCTKVVAIHEGELVEYDDPMKLMKREESLFGQLVKEYWSHLQSAESH 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02964 1478 CDD ABCC_MRP_domain1 623 823 - -
Vimu3g02964 1478 CDD ABCC_MRP_domain2 1230 1450 - -
Vimu3g02964 1478 FunFam ABC transporter C family member 3 1215 1467 - -
Vimu3g02964 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g02964 1478 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Vimu3g02964 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1466 IPR003439 GO:0005524
Vimu3g02964 1478 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Vimu3g02964 1478 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016020
Vimu3g02964 1478 Gene3D ABC transporter type 1, transmembrane domain 880 1213 IPR036640 GO:0005524|GO:0016020
Vimu3g02964 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1461 IPR027417 -
Vimu3g02964 1478 Gene3D - 617 852 IPR027417 -
Vimu3g02964 1478 FunFam ABC transporter C family member 10 292 605 - -
Vimu3g02964 1478 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Vimu3g02964 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 846 IPR003439 GO:0005524
Vimu3g02964 1478 SMART AAA_5 650 823 IPR003593 GO:0016887
Vimu3g02964 1478 SMART AAA_5 1258 1458 IPR003593 GO:0016887
Vimu3g02964 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 926 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g02964 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 846 IPR027417 -
Vimu3g02964 1478 FunFam ABC transporter C family member 10 606 859 - -
Vimu3g02964 1478 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1466 - -
Vimu3g02964 1478 Gene3D - 1216 1467 IPR027417 -
Vimu3g02964 1478 SUPERFAMILY ABC transporter transmembrane region 913 1212 IPR036640 GO:0005524|GO:0016020
Vimu3g02964 1478 Pfam ABC transporter 1249 1397 IPR003439 GO:0005524
Vimu3g02964 1478 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g02964 1478 Pfam ABC transporter transmembrane region 919 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g02964 1478 FunFam ABC transporter C family member 5 881 1213 - -
Vimu3g02964 1478 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016020
Vimu3g02964 1478 CDD ABC_6TM_ABCC_D2 914 1207 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02964 Vimu-Chr3 43732076 43738324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02964 617 866 Calmodulin-binding Proteins AT2G36910 30.627 8.20e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02964 K05666 - gmx:100784336 2650.93