Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02960 ATGCTTTGTTCCTCTCTCCCACCACTTTTCTTCTTCTTCCTCCTTCCCTCTGTACTTTCATTCCCTCTCTTCCCCTCCAACAACCTCACCCTCTACGGTGACGCGTTCTTCTCTCACAAAGCCATCACTCTCACCACCCACCAACCCACCTGCTCCTCCTCCTCCATCGGCAGAGCCTTCTTCATCTACCCCCTCCGTTTTCTTGACCCCCAAACCAACTCCACCGCCTCCTTCTTCTCCCGCTTCTCCTTCTCCATCCTGTCCTCTCCCTCCTGCCCCTCCGGCGAAGGCCTCGCCTTCCTCATCGCCTCTTCCACCCACTTCCCTGCCCTCTCCATGGGCCTCCCCCAACCCTCCCCCAACTCAACCTCCTTCTTCGCCGTCGAGTTCGACACTACCTTCGACCCCTTCCTCGGCGACATCAACGACAACCACGTGGCCCTCGACGTCAACAGCGCCTCCTCCTTCGCGTCCGTCGACGCCTTCTCCCGCGGCATTGACCTCAAGAGTGGCAAACTCATCACTGCATGGGTGGAGTACCGTCATGCAATCAAGATGGTAAGTGTATGGCTCGCTTATTCCTCCACCAGACCTTCCACTCCCATTCTTGTTTCTCAAATAGACCTCTCCGAGAGACTTGAAGACTTCATGCACGTTGGTTTCACGGCCTCCAATGGGAAGGGGTCAAGTGATTACCTTGTTCATCATTGGCAGTTCACGACTTTCGGCCATGACTCGCGCTCCATGGATGTGATCGATGAAGGTCATGGTTCGAACATGAGGGTGAATGAGAGGAAGAAAAAGATTAAGGAGATGGCTCTTGGGTTGGGAGGGTTGACGGCGTTTGTGGTGTCGGTTTTGGCGGCGATGATTGTGGTGTGTGTTTTCTTGACAAGGAAGAAAGGAGTTGTTAGGAAGAATATGGAGCAAAGGCAAAGTTGTGGGTCTCGGACGAGTAAAGTTCCGACTAGGTTGTCACTCTCGGAGATTAAGTCTGCGACAATGGGGTTTAATCGTGACAGGCTTGTTGGGGAGGGTGCCTCTGCCAAGGTTTATAAAGGGTATCTTCCCTTCGGAGGGGATGTGGCAGTGAAGAGATTTCAGAGGCAAAAGGATTTGAATTGTTTGCATAACCCTTTTGCAACCGAGTTTGCCACCATGGTGGGTTACTTGCGGCACAAGAATTTGGTTCAGCTTAAGGGGTGGTGCTGTGAGGGAAAAGAGTTGGTTCTGGTTTACGAGTTTCTTCCCAATGGGAGCCTGAATAAGGTTCTGCACAGGAACTTCAATTCTTCTATTGTTCTATCGTGGAGGCAAAGGGAGAATATCGTTCTTGGGGTTGCTGCTGCTCTGACCTATCTTCACGAAGAGTGTGAGAGGCAGATCATTCACAGGGATGTGAAGAGCTGCAACATAATGCTTGATGCAGATTTCAATGCGAAGCTTGGGGATTTTGGGCTTGCGGAAGTGTATGAGCACAGTTGTAGCAGGAGGGAAGCTACTATACCGGCAGGGACAATGGGGTATCTTGCTCCTGAATATGTTTATTCTGGTGTTCCTACTGTGAAGAGTGATGTGTATAGCTTTGGGGTGGTGGTGTTGGAAGTGGGAAGTGGGAGGAAGCCTGTGGAAGATGATGGCAGTGTGGTTGTGGACTATGTGTGGAGCTTGTGGGAAAAGGGGAAACTGATTGAGGGTGCTGATCCAAAATTGATGGGGAAATTTGATGCAGTAGATATGGAAAGGATGCTATTGGTGGGGCTTCTATGTGTGCATCCTGATCATGAGAAGAGGCCAACAGTAAGAGAAGCAGCAAGAATGCTTAATAAGGAAGCACCACTTCCTGTTTTACCTCATGTTAAACCAAGGCTCAGAATTAGGCCTATTTCTCCTCAAACAAACCATGTTCTTGGAGATTGCCTCAGCACAGATGAGCCTCCTTATTTCACCCCCAGAAGTCACTTTTACTAA 1971 0.5033 MLCSSLPPLFFFFLLPSVLSFPLFPSNNLTLYGDAFFSHKAITLTTHQPTCSSSSIGRAFFIYPLRFLDPQTNSTASFFSRFSFSILSSPSCPSGEGLAFLIASSTHFPALSMGLPQPSPNSTSFFAVEFDTTFDPFLGDINDNHVALDVNSASSFASVDAFSRGIDLKSGKLITAWVEYRHAIKMVSVWLAYSSTRPSTPILVSQIDLSERLEDFMHVGFTASNGKGSSDYLVHHWQFTTFGHDSRSMDVIDEGHGSNMRVNERKKKIKEMALGLGGLTAFVVSVLAAMIVVCVFLTRKKGVVRKNMEQRQSCGSRTSKVPTRLSLSEIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFQRQKDLNCLHNPFATEFATMVGYLRHKNLVQLKGWCCEGKELVLVYEFLPNGSLNKVLHRNFNSSIVLSWRQRENIVLGVAAALTYLHEECERQIIHRDVKSCNIMLDADFNAKLGDFGLAEVYEHSCSRREATIPAGTMGYLAPEYVYSGVPTVKSDVYSFGVVVLEVGSGRKPVEDDGSVVVDYVWSLWEKGKLIEGADPKLMGKFDAVDMERMLLVGLLCVHPDHEKRPTVREAARMLNKEAPLPVLPHVKPRLRIRPISPQTNHVLGDCLSTDEPPYFTPRSHFY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02960 656 CDD STKc_IRAK 343 610 - -
Vimu3g02960 656 FunFam L-type lectin-domain containing receptor kinase S.6 304 415 - -
Vimu3g02960 656 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Vimu3g02960 656 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 243 IPR013320 -
Vimu3g02960 656 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02960 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vimu3g02960 656 Gene3D Transferase(Phosphotransferase) domain 1 416 613 - -
Vimu3g02960 656 Pfam Legume lectin domain 20 244 IPR001220 GO:0030246
Vimu3g02960 656 Gene3D - 19 254 - -
Vimu3g02960 656 SUPERFAMILY Protein kinase-like (PK-like) 321 626 IPR011009 -
Vimu3g02960 656 Gene3D Phosphorylase Kinase; domain 1 298 415 - -
Vimu3g02960 656 FunFam L-type lectin-domain containing receptor kinase VIII.1 416 626 - -
Vimu3g02960 656 PANTHER - 46 615 - -
Vimu3g02960 656 CDD lectin_legume_LecRK_Arcelin_ConA 20 243 IPR001220 GO:0030246
Vimu3g02960 656 ProSiteProfiles Protein kinase domain profile. 337 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02960 656 Pfam Protein kinase domain 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02960 Vimu-Chr3 43690596 43692608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02960 9 655 Receptor kinase-like Gene Family AT5G42120 53.353 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu3g02960 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02960 - - gmx:100783805 986.482