Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02958 ATGGGGCTAACGGGAGAAAGTGAAGTGAGAGAAAGCGAGATACTGAGGTCGAGGTTTATGATGTACGGAACTTTGTGCAGCGATCGCAGAGGGTGGTGGCGTTTCGATCTTGTTAGCCACAGGAATGCCGACCGTGACATCGACCAAGTCTCTGTTTTTGGGGGGAATGTGATGATTGTGATCAGGTGCGCGCGCGTGTGTTTCTTTGTTGAAAGTGATTGGGAAATAGTGAGAGGTGACGGTGCAGGAGTGAAGACATGTGATTTGTTGCTTTTTCAACTGCCATGGAATATGAGTGTCTTGAAGAGGAAAGATAAGGGATGCTTGTCTGTGTTCGAATTAACATATGAGACGCGGGGTATTGTGGCGGACTTGGCATTGATTGTTTTGAAAAAGGGTGCTCAACTACTTAAATATGGTCGTAAGGGAAGGCCTAAGTTTTGTCCGTTTAGACTTTCCAATAGGATTCTTTGGTTCATTCTCAGAGGAAGGGTGCAGGTCATCATCATTGTTGTTGTTATTATTATTATTATTTTTAAATTCTATTTCTATGTCCACAATTTAGATGAATTGTCTTTAATCTGGATATCAAGCAGTGGAGAAAGAAATCTGAAACTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAAAGATATCTGCGTCCTGAGAAGGATTATCTTTCTTTTTCACTTATTTACAACAACGGGAAGCGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTACTGGTCTCAAGGCACTGATATCTTCAGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTCTATCTTGATGACGGCAGAGACTTGACATCAAATAGTCCAAGTGAAAGTTCAGTTAGTGCTTCACGAGACATCAGTTCTCCTGACATTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTCACTCTGAAAATACTGTAAATTTTGATAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCTAGTCATGGGTCTGCACCTGACGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTAAAACTTGGAGCTGATAAAAGTGCTAGTTATTTCAGTCCAAGAACAGATATTCTCCTCCCCAGGCCACTGGAGTCGAATGTGGTTTTAGATGTGCTTCAAATATCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAGGGTGAACTTTTCACATGGGGTGAAGAATCTGGTGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGATTCAACCTCGTCTAGTTGACGCCATGACTTCTGCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACGATGTTTGGGGAACTGTATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCACGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCGCTAGAGGGGCTTCAAGTTGCGTTAGTCACCTGTGGTCCATGGCATACAGCCTTGATAACCTCAACTGGTCAGCTCTTTACATTTGGGGATGGAACATTTGGTGTCCTCGGCCATGGAGATAGGGAAAATGTCCCGTATCCAAGAGAAGTAGAATCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGCGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACTCAATCAAGTGCTAGTGTATCGTCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAACCGTCTTGGACATGGAGACAAGGATGCTCGGCTTGAACCAACTTGCGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGTGGACACAGTTTGACAGTAGGGCTGACAACATCCGGTCAAGTTTTTACAATGGGAAGCACGGTTTATGGTCAGCTTGGGAATCCCCAGTCGGATGGAAAGCTGCCGTGTTTGGTTGAAGACAAGCTTGCAGGAGAATCTGTTGAAGAAATTGCATGCGGGGCTTATCATGTTACTGTTTTAACGTGCAAAAATGAGGTTTACACTTGGGGAAAGGGAGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCTTGTGGTTCAAACTACTCTGCAGCCATATGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAAGCGTTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTAGTGCACTGTCATTCATGTAGTTCTCGGAAAGCATTAAGAGCTGCACTGGCTCCAAATCCTGGAAAGCCATATCGTGTATGTGATTCGTGTTTTGTAAAATTGAACAAGGTTTCTGAATCAGGCAATAATAATCGAAGGAACGCTCTGCCTCGTTTGTCAGGCGAAAACAAGGACAGATTAGAGAAGTCTGACCTAAGATTAACCAAGACAGCTGTTCCTTCTAATATGGATTTGATAAAGCAGCTTGATAGCAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCAATCCACAACCACAATCTTTGCTACAGCTTAAAGATGTTGTCCTGTCTACAGCTGTTGATTTGAAGCGAACAGCTCCAAGACCTGTGCTGACGCCATCCGGAGTGAGTTCCAGGTCTGTGTCTCCATTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCAGGGCTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAGCTTTTGAATCAGGAAGTATTAAAGTTACGTGCTCAGGTTGAGACCCTGAGACAGAGATGTGAAATGCAAGAATTAGAGCTTCAAAGGTCATCAAAAAAGACTCAGGAGGCTATAGCTCTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCCCCTGGCGCTTATGATGCCGAGAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGAATTCACTATCCAGAAATAAACGGGGAGCGTCACACCAGGGCCGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATTGGAATTGAATCATCCCTGCCGAGCAGAACCGAAGGCACTCTGACCGGAAACTATGGAGCTAATCTTTACCAGCAAAACCGGGGATCTGTAATCCCTAATGGGACAGATGAGTACCCAGATGTTAAATTGCCAAACGGAAGCAGCAGCGTGATCCAGACAAGTGGTAGTACTGCATCAGATACTGTTGATGGTAGGGATTCTGGAAATTTTCAAGATGATGAGAGTGGTTTGAGATCAAGGAATGCCATAATACCTGCTAATAGTAGTCAAGTTGAGGCAGAATGGATTGAACAATACGAACCTGGTGTCTATATAACACTTGTTGCCCTGCGTGATGGAACAAGAGATCTGAAACGAGTGCGGTTCAGCCGGCGAAGATTCGGTGAGCACCAAGCTGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACGAGAGGTACAACGTTCGAAGCAGCGACAAATCTTCCGGCCAAGGGGCACGTAAGGCAGATGGTGGTGGTTCACCTGTTTTATAA 3792 0.4462 MGLTGESEVRESEILRSRFMMYGTLCSDRRGWWRFDLVSHRNADRDIDQVSVFGGNVMIVIRCARVCFFVESDWEIVRGDGAGVKTCDLLLFQLPWNMSVLKRKDKGCLSVFELTYETRGIVADLALIVLKKGAQLLKYGRKGRPKFCPFRLSNRILWFILRGRVQVIIIVVVIIIIIFKFYFYVHNLDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWITGLKALISSGQGGRSKIDGWSDGGLYLDDGRDLTSNSPSESSVSASRDISSPDISVSLANTSPQSFHSENTVNFDRSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKLGADKSASYFSPRTDILLPRPLESNVVLDVLQISCGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVDAMTSATVDFVACGEFHTCAVTMFGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESVEEIACGAYHVTVLTCKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVSESGNNNRRNALPRLSGENKDRLEKSDLRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRNPQPQSLLQLKDVVLSTAVDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLRQRCEMQELELQRSSKKTQEAIALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLEPNGIHYPEINGERHTRAESISGSSLASIGIESSLPSRTEGTLTGNYGANLYQQNRGSVIPNGTDEYPDVKLPNGSSSVIQTSGSTASDTVDGRDSGNFQDDESGLRSRNAIIPANSSQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSSDKSSGQGARKADGGGSPVL 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02958 1263 CDD FYVE_like_SF 776 829 - -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 925 958 - -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 547 IPR000408 -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 1137 1157 - -
Vimu3g02958 1263 Pfam Transcription factor regulating root and shoot growth via Pin3 1184 1239 IPR013591 -
Vimu3g02958 1263 Pfam Pleckstrin homology domain 201 266 IPR001849 -
Vimu3g02958 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 844 IPR013083 -
Vimu3g02958 1263 FunFam PH, RCC1 and FYVE domains-containing protein 1 601 772 - -
Vimu3g02958 1263 Pfam Transcription factor BRX N-terminal domain 1018 1053 IPR027988 -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 492 IPR000408 -
Vimu3g02958 1263 FunFam Putative E3 ubiquitin-protein ligase HERC1 773 841 - -
Vimu3g02958 1263 Pfam FYVE zinc finger 767 833 IPR000306 GO:0046872
Vimu3g02958 1263 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 534 544 IPR000408 -
Vimu3g02958 1263 FunFam PH, RCC1 and FYVE domains-containing protein 1 350 600 - -
Vimu3g02958 1263 SUPERFAMILY FYVE/PHD zinc finger 767 839 IPR011011 -
Vimu3g02958 1263 CDD PH_PLC_plant-like 124 267 - -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 611 662 IPR000408 -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 928 945 - -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 1136 1168 - -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 550 564 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 424 437 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 443 459 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 493 509 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 534 550 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 652 670 IPR000408 -
Vimu3g02958 1263 PRINTS Chromosome condensation regulator RCC1 signature 710 731 IPR000408 -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 440 IPR000408 -
Vimu3g02958 1263 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 201 1038 - -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 1241 1263 - -
Vimu3g02958 1263 Gene3D - 178 272 IPR011993 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 548 596 IPR000408 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 441 489 IPR000408 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 716 763 IPR000408 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 662 710 IPR000408 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 493 544 IPR000408 -
Vimu3g02958 1263 Pfam Regulator of chromosome condensation (RCC1) repeat 610 657 IPR000408 -
Vimu3g02958 1263 Coils Coil 1023 1043 - -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 840 860 - -
Vimu3g02958 1263 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 586 596 IPR000408 -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 715 766 IPR000408 -
Vimu3g02958 1263 MobiDBLite consensus disorder prediction 319 349 - -
Vimu3g02958 1263 SUPERFAMILY RCC1/BLIP-II 378 768 IPR009091 -
Vimu3g02958 1263 SUPERFAMILY PH domain-like 180 266 - -
Vimu3g02958 1263 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Vimu3g02958 1263 Gene3D - 603 772 IPR009091 -
Vimu3g02958 1263 SMART fyve_4 765 834 IPR000306 GO:0046872
Vimu3g02958 1263 Coils Coil 967 1008 - -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 599 IPR000408 -
Vimu3g02958 1263 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 771 833 IPR017455 -
Vimu3g02958 1263 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 663 714 IPR000408 -
Vimu3g02958 1263 ProSiteProfiles BRX domain profile. 1185 1240 IPR013591 -
Vimu3g02958 1263 Gene3D - 318 602 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02958 Vimu-Chr3 43662395 43669352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02958 1186 1256 Major Intrinsic Protein MIP AT1G31880 46.479 2.70e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02958 - - gmx:100783270 1966.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02532 8 34264152 34269065 Vimu3g02958 3 43662395 43669352 PCT