Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02951 ATGGATTTCGTAGAAGGCGTTGGAGAGAGCTCCTCGCCGCCGCGCGCCTTTAGCGGTTTCGGAAACTACGACGTTCGCAACGACGTCTTCAACCGCCTTCTTGAAACAGGCCACGACCAGGCCGTTTCCAATCCCGAGTTTCGAGAGCAGTTGGAGGCTCACTTCAATCGTTTGCCTCCGAGTTATGGACTTGATGTGAATATCGATAAAGCTGAAGATGTTTTGTTGCATCAAAGGCTTCTTGCTCGGGCAAGGGATCCTGATAAGCGTCCTGTTTACCACATACGCTTCCTCGAGAATATTTCAACTAGAACAAATGGTGAAGATCAACAAATTTTAAGTACTCATTATAGGACAGGGTCATCTCATGCAACAAATGGGGTAGCTGTACCATCTGGGAAAAGTACGGTGAGGGAGGTTGCAAATGAGTTTGAGCCCTGCTCAAAGCTCGAGGACTTAAATTTGGATGTTAGAAATAACTCCAAGGAAACACAGGAAGTATTTCTCGCTGACAACTTTTTTCAGAGGCATGAACATTCAAGTATCCGAGTTCATGAAATAATATTTTCTACTGTTGACAAGCCAAAGCTGTTAAGCCAGCTGTCAGCTTTGCTGTCTGATATTGGACTTAACATCCGTGAAGCACATGTTTTCTCCACAACTGATGGCTATTCCCTTGATGTGTTTGTGGTTGATGGGTGGCCAGTTGAGGAAACAGATGAATTGTATGATGCCATGGAAAAAGCTGTAGCAAGAAGTGAGGGGTCATGGTCCCGTCCTTCAAATTCTCATTCAGCTGTTGAGAAAGCCTTAGCAACAGAGGGAAAATTGGGAGATTGGGAAATAGACAGGAGGTTGCTGAAGTTAGGAGAAAAAATAGCGTCTGGATCCTCTGGAGATTTGTATCGAGGAGTTTATCTTGGGGAAGATGTTGCTGTTAAGGTTCTGAGATCTGAGCAATTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTACAGCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACTAAGTGTCCGAATTTCTGCATAGTAACAGAGTATATGCCCGGAGGAAGTCTTTATGATTACATGCACAAAAATCATAATGTCTTGGAACTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGATTTTGGAGTCGCTCGGTTCCTAAATGAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCCGAGCCCTATGATCAGAAAGCAGATGTTTTCAGTTTTTCCATTGTACTGTGGGAATTAGTGACCGCAAAGGTACCATATGACAACATGACTCCACTACAAGCGGCTTTGGGTGTGAGACAGGGTCTGCGGCCAGAGCTTCCGAACCATGGGCACCCTAAACTATTAGAGTTGATGCAGAGATGTTGGGAAGCCATTCCAATCGACCGTCCATCCTTTAATGAGATAACGGTTAAACTTGAAAATATTTTGCAAGAAATGGAGAAAGATTCAGAACCAAATGGTGCTTGA 1548 0.4406 MDFVEGVGESSSPPRAFSGFGNYDVRNDVFNRLLETGHDQAVSNPEFREQLEAHFNRLPPSYGLDVNIDKAEDVLLHQRLLARARDPDKRPVYHIRFLENISTRTNGEDQQILSTHYRTGSSHATNGVAVPSGKSTVREVANEFEPCSKLEDLNLDVRNNSKETQEVFLADNFFQRHEHSSIRVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDELYDAMEKAVARSEGSWSRPSNSHSAVEKALATEGKLGDWEIDRRLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRSEQLNDALEDEFAQEVAILRQVQHKNVVRFIGACTKCPNFCIVTEYMPGGSLYDYMHKNHNVLELSQLLKFAIDVCKDFGVARFLNEGGVMTAETGTYRWMAPEPYDQKADVFSFSIVLWELVTAKVPYDNMTPLQAALGVRQGLRPELPNHGHPKLLELMQRCWEAIPIDRPSFNEITVKLENILQEMEKDSEPNGA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02951 515 ProSiteProfiles Protein kinase domain profile. 287 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02951 515 ProSiteProfiles ACT domain profile. 186 260 IPR002912 -
Vimu3g02951 515 SUPERFAMILY Protein kinase-like (PK-like) 273 505 IPR011009 -
Vimu3g02951 515 FunFam Serine/threonine-protein kinase isoform 1 278 365 - -
Vimu3g02951 515 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 162 393 - -
Vimu3g02951 515 Gene3D Transferase(Phosphotransferase) domain 1 393 509 - -
Vimu3g02951 515 CDD STKc_MAP3K-like 293 499 - -
Vimu3g02951 515 SUPERFAMILY ACT-like 185 253 IPR045865 -
Vimu3g02951 515 Gene3D Phosphorylase Kinase; domain 1 276 364 - -
Vimu3g02951 515 Pfam Protein tyrosine and serine/threonine kinase 287 394 IPR001245 GO:0004672|GO:0006468
Vimu3g02951 515 Pfam Protein tyrosine and serine/threonine kinase 395 499 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02951 Vimu-Chr3 43559627 43573113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02951 24 509 MAP Kinase Kinase Kinase AT4G35780 42.751 3.31e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu3g02951 PK_Tyr_Ser-Thr 5.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02951 - - gmx:100797987 914.835