Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02947 ATGGAAAACAACGACATCGGAGCTCCGTCTGATGCCTCGCTCTTTGACCAGATTGTGGCGACGGAGCAACCACACAGCCCCATACACTCCGACCCCTCCTATCCTCTCCTCGACACCTTCGTCGACCTTCTCAACGTCGATACCAAACATTTTGATTTCGAAATGTTCAACTCTCCACTGCCTCCTCCGCCGCCAACCGCTCCTCTAGTGTCCGTTCACTCCGAAATCTCGGAGAAACCAAACGAGCAGACCTCGACGCCTGCACCAGTAGGGTCCACAGACGGACTCGATAGTGGAAAGTCCGTGGTCTCGGATGATCTCTGCATGGCAGGCGGTGCTGAGAATTCCGGAGAGAACAAGCAGAAGCGGCGTCGGCAGAATGTTCCCCTGGACGCGTCACTGACAGCTTTGATGCAGGCCGCGCCAGCGATTTCTTTGGCGAGGAAGCCCATGGGGCCGGAGGAGCTTGCTGAACTTGCTATGGTTGATCCCAAGAAGGCTAAGAGGATTATTGCCAATAGGGAATCTGCTGCTAAATCAAAGGAGAGGAAAAAGCGTTATTTGATAGAGTTGCAAAAGAATGTGGAATTGCTCGGAATTCAAATAACTAAAGTGTTTGATAATATTTGCATGCTTGAGATGGCGAATAGAGGAAGGGCTGTTCATGTAAAGGAGCACAGAGTAAAATTAGACGTCATGCGAGAAGAAGACCGAATTAAAGATGGTATGCATAGTTTCTAG 741 0.502 MENNDIGAPSDASLFDQIVATEQPHSPIHSDPSYPLLDTFVDLLNVDTKHFDFEMFNSPLPPPPPTAPLVSVHSEISEKPNEQTSTPAPVGSTDGLDSGKSVVSDDLCMAGGAENSGENKQKRRRQNVPLDASLTALMQAAPAISLARKPMGPEELAELAMVDPKKAKRIIANRESAAKSKERKKRYLIELQKNVELLGIQITKVFDNICMLEMANRGRAVHVKEHRVKLDVMREEDRIKDGMHSF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02947 246 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 70 243 - -
Vimu3g02947 246 SMART brlzneu 161 225 IPR004827 GO:0003700|GO:0006355
Vimu3g02947 246 Pfam bZIP transcription factor 165 198 IPR004827 GO:0003700|GO:0006355
Vimu3g02947 246 Gene3D - 164 218 - -
Vimu3g02947 246 MobiDBLite consensus disorder prediction 57 125 - -
Vimu3g02947 246 SUPERFAMILY Leucine zipper domain 165 212 IPR046347 GO:0003700|GO:0006355
Vimu3g02947 246 MobiDBLite consensus disorder prediction 76 92 - -
Vimu3g02947 246 CDD bZIP_plant_RF2 166 217 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02947 Vimu-Chr3 43519397 43523589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02947 111 243 bZIP Transcription Factor Family AT2G40620 39.098 6.51e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g02947 bZIP_1 6.2e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02947 K20557 - gmx:102664725 140.584