Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02944 ATGGGGAGGAAGAAGCCGACTGCGAGGGACGAGGAGAACGCGTCGCAGCAAGGCGGTGGCGGGAAATCTAAGAAGAAGGCCGTGGTCATCGACGACGATGAGTATTCCATTGGAACAGAGCTCTCTGAGGAGCCGGCGCTGGAAGAGAAACCCGCTGCGGCGGGAAAGAAGAAAAGCAAGAAGGGCAATGCTAAAAGTAAGAGTAACGATGATGATGTTGATGATGATGAAGATGTGCCTGAAGTTGTGTTTTCTGGGAAGAAGAAGGGGAAAAACAAGAAAGGCGGTGGGAGCACTGCGTTTACTGCATCTGGCTTTAGTTTGCTTGGTGATGAGGAAGGTGACGAAGAAGATAAATCTGAAGAGGACGGACCTGCGGTTAATTTTTCGGGTAAGAAGGCATCGAACAAAGGAGGTGGTAGTTTGTTCAATGCATCAGCTTTTGATGCTATCGACGATGATGCTGGTGGTGAGGAGGAGGAGGAGGATGAGCCAGTGGTTAGCTTTACTGGAAAGAAAAAGTCTTCGAAGGTTTCGAAGAAAAGCGGTGGTAGTTTGTTCGCTGCATCGGCTTTTGATGCCATTGATGATGGTGGGGATGGTGAGGTGGCAGATGATAAGAATAATGATTTTGATGACGATGAACCTGTTATTACTTTCACGGGGAAGAAGAAGTCTTCGAAAGGCAGTAAAAAGGGTGGTGCTGTGTTTTCTGCCTCTGTTCTCACTGAAATCGATGATGAAGAGGAGAAGGAGGATGGTGGTGGTGATGATGACGATGCCATTGGACCAATTACTTTCTCTGGCAAGAAGAAGAAGTCTTCCAAGAAAGCTGCAAGTTCCGGTGGCAAAGCTGTGTCTGTTGAGGATGATGTTTCTGTACCCGAGTTTGGTAAGGATGGTGATGACATGGATGAGGATGATGTTTCTTTAGTTTCGTTTTCAGGTAAAAAGAAGTCCTCTAAAAAGAAGGGCAGTAGCACTGCTGCCAAAGGGAGTGAGGAAAATGTGGATGTAGTTGAGCCTGAGGCACCCACTATTGGTAGTGCTGATGCTAGCAACAGCAATGTAAATAAGAGTGAAGGAGTTGCTGAAACTTCCAAAAACAAGAAGAAGAATAAGAAAAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGATAAGCTTCTTGCAGAGCTCGGTGAGGCTCCTATACCAAAACCAACTGCTTCTGCACCACAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTCCTGCTGCTGATGATGCTTCTGGGGAAAAGGAGGGTGAAGAGGAGGTGGTAGAATCAGCTGCTGCAAAGAAGAAAAAGAAGAAAAAGGAAAAGGAGAAGGAGAAGAAGGCAGCTGCCGCTGCCGCTGCGGCAGCAGGAAGTGCACCAGAAAAAGAATCAGCTGAAGTTAAAGCTGAGGCAATTGAACCAAAGAAGAATGACTCAAAGGCTAAGGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGAGAGATGCAAGAGGCACTAGCTCGAAGAAAAGAGGCTGAAGAGAAGAAGAAACGAGAAGAGGAAGAGAGGTTAAAGAAGGAAGAAGAGGAGCGACGCAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAAGCTAAGCGCAGAAAGAAGGAAAGAGAAAAGGAAAAAAACCAGAAAAAAAGGCAAGAAGGTAAATTATTAACTGGTAAGCAGAAGGAAGGAGCACGTCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACTGGGGGTCTGACTCTCCCTTCTGGGGACTCTGGTGCTCCAGCTAAAAAACCCATATACCAGACAAAGAAGGCAAAAGCAAATAATAGAAATCAGAATGGTGCTACTGCTCAGGCAGCTGAAATTGTCGAAGCGAAGGAGACTGCTACTGATGTAGTTTCTGAGGAACCAGTAAATATTGAAGAAGTGGAGTCGATTCAGGTGGATGATAAAGTTGAACTTCCTGTCACTGCTGAAGATGATGTGGTGGAAGACGATGAAGATGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCACAGGTGCATTTGCAGACGAAGAGGCTGACTCCGAACCTAAACCTGTTATCAAAAAGGAGATTAAAAATGCCATGCCTATTCAGAATGCCGGGGCTGCTAGTGCAACTGTTTCTGGGCCCGTGGCTAATGAAACTGAAAATGGAAAGCAAGCTAATGCTGTGGTTACAGACAGAAATAAGAAGCAAGATTCTGATTTGAATAGGTCAAAAAAATCTGCTACCCCTCCTCAGCCTAATGATGAAAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCACGTGGATACTGGGAAGACTAAGCTGTTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGAGGTATCACACAACAGATTGGAGCAACATACTTTCCCGCTGAGAACATACGTGAAAGAACAAAGGAACTGAAAGCTGATGCCAAGCTGAAAGTTCCTGGTCTACTGGTTATTGACACCCCTGGGCACGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGCCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAGTCACTGAATCTATTAAAAATGAGGAATACAGAGTTCATTGTTGCCTTAAATAAGGTTGACAGGCTTTATGGATGGAAAACGTGTCGCAATTCCCCAATTGTCAAAGCACTGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCACTCAGATTGTTACTCAATTCAAAGAACAAGGGATGAATACTGAGTTGTACTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGCGGGGAAGGAATTCCCGATTTGTTATTACTTTTGGTTCAATGGACCCAAAAAACAATGGTCGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTTAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACTCCTCATCCAATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAGCATGCCATTGCTGGCACTGGTTTATACGTGGTGAAGCCTGATGATGATTTGGAAGATATCAAAGAAGCAGCAATGGAAGATATGCGATCAGTTATGAGCAGGATTGACAGGACCGGTGAAGGTGTTTGTGTACAGGCATCTACCCTTGGTTCCTTAGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTTAGTATCCCTGTTAGTGGTATAAGCATTGGTCCTGTTCACAAAAAAGATGTAATGAAGGCCAGTGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACACCTGAGGCTAGGGAACTGGCAGATGAATTGGGTGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCGTATATTGACAACATTAAAGAGGAGAAAAAGAAAGAAGCTGCTGATGAGGCAGTCTTCCCATGCGTTTTTAAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGTGTTGATATTCTTGAAGGCATTGCAAAGATTGGGACTCCAATTTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATCGAAAATAACCACAAACCTGTTGATTATGCCAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAAATGTTTGGGAGACATTTTGAGATCGACGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAAACTAATTATCGGGATGATCTATCTATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4101 0.4338 MGRKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSIGTELSEEPALEEKPAAAGKKKSKKGNAKSKSNDDDVDDDEDVPEVVFSGKKKGKNKKGGGSTAFTASGFSLLGDEEGDEEDKSEEDGPAVNFSGKKASNKGGGSLFNASAFDAIDDDAGGEEEEEDEPVVSFTGKKKSSKVSKKSGGSLFAASAFDAIDDGGDGEVADDKNNDFDDDEPVITFTGKKKSSKGSKKGGAVFSASVLTEIDDEEEKEDGGGDDDDAIGPITFSGKKKKSSKKAASSGGKAVSVEDDVSVPEFGKDGDDMDEDDVSLVSFSGKKKSSKKKGSSTAAKGSEENVDVVEPEAPTIGSADASNSNVNKSEGVAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPIPKPTASAPQDDKVQPTPEVGPAADDASGEKEGEEEVVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPEKESAEVKAEAIEPKKNDSKAKAADKKVPKHVREMQEALARRKEAEEKKKREEEERLKKEEEERRRQEELERQAEEAKRRKKEREKEKNQKKRQEGKLLTGKQKEGARRLEAMRRQILNSTGGLTLPSGDSGAPAKKPIYQTKKAKANNRNQNGATAQAAEIVEAKETATDVVSEEPVNIEEVESIQVDDKVELPVTAEDDVVEDDEDDEWDAKSWDDVNLNATGAFADEEADSEPKPVIKKEIKNAMPIQNAGAASATVSGPVANETENGKQANAVVTDRNKKQDSDLNRSKKSATPPQPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKALKQQTKDVQNEFNMRLTQIVTQFKEQGMNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKEAAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKEAADEAVFPCVFKILPNCIFNKKDPIVLGVDILEGIAKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWRLVVKLKNLFKIQ 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 723 775 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 471 580 - -
Vimu3g02944 1366 CDD IF2_aeIF5B_IV 1237 1332 - -
Vimu3g02944 1366 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1099 1228 IPR036925 -
Vimu3g02944 1366 Gene3D Translation factors 997 1117 - -
Vimu3g02944 1366 FunFam eukaryotic translation initiation factor 5B 997 1116 - -
Vimu3g02944 1366 PRINTS GTP-binding elongation factor signature 894 903 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 PRINTS GTP-binding elongation factor signature 858 869 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 PRINTS GTP-binding elongation factor signature 842 852 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 PRINTS GTP-binding elongation factor signature 778 791 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 Coils Coil 496 565 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 1 604 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 667 682 - -
Vimu3g02944 1366 SUPERFAMILY Translation proteins 1233 1365 IPR009000 -
Vimu3g02944 1366 NCBIfam small GTP-binding protein domain 779 905 IPR005225 GO:0005525
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 652 666 - -
Vimu3g02944 1366 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 469 1363 IPR015760 -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 377 392 - -
Vimu3g02944 1366 FunFam Eukaryotic translation initiation factor 5B 1116 1222 - -
Vimu3g02944 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1065 IPR027417 -
Vimu3g02944 1366 Gene3D Translation factors 1229 1366 - -
Vimu3g02944 1366 Coils Coil 429 461 - -
Vimu3g02944 1366 Gene3D - 768 996 IPR027417 -
Vimu3g02944 1366 FunFam Eukaryotic translation initiation factor 5B 768 996 - -
Vimu3g02944 1366 CDD aeIF5B_II 998 1108 - -
Vimu3g02944 1366 Pfam Elongation factor Tu domain 2 1013 1088 IPR004161 GO:0005525
Vimu3g02944 1366 Pfam Translation-initiation factor 2 1103 1215 IPR023115 -
Vimu3g02944 1366 FunFam Eukaryotic translation initiation factor 5B 1229 1366 - -
Vimu3g02944 1366 CDD IF2_eIF5B 777 987 - -
Vimu3g02944 1366 Gene3D - 1118 1222 IPR036925 -
Vimu3g02944 1366 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 774 990 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 Pfam Elongation factor Tu GTP binding domain 778 986 IPR000795 GO:0003924|GO:0005525
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 243 259 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 636 686 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 723 746 - -
Vimu3g02944 1366 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02944 Vimu-Chr3 43490714 43498073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02944 1 41 Eukaryotic Initiation Factors Gene Family AT1G76810 65.217 6.67e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02944 K03243 - gmx:100814875 1828.91