Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02940 ATGGATCACAGTGCGGATGCTCAACGCACAGACTTGATGACCATCACCCGTTTCGTGCTGAACGAACAGTCGAAGCAACCTGAGGCTCGTGGCGATTTCACAATCTTGCTCAGTCACATTGTTCTTGGCTGCAAGTTCGTCTGTTCTGCTGTTAGCAAGGGTGAGGAGCAAAAGAAACTGGACGTCCTTTCCAATGATGTCTTTGTCAAGGCTCTGGTCAGCAGTGGACGAACATGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAGCCTTCTAAGCGTGGAAAGTACATAATTTTTGGGATTTATTTGGTGAAAGAAAACCGTGAACCAACCATAGAAGATGTTTTGCAACCGGGGAAGAACATGTTGGCTGCTGGTTATTGTATGTATGGAAGCTCTTGCACGTTTGTGTTAAGCACCGGAAGTGGTGTGAATGGTTTCACCCTTGATCCATCTCTTGGAGAGTTCATTCTTACTCACCCTGACATCAAGGTCCCGAAGAAAGGAAAGATATATTCAGTGAACGAAGGAAATGCTAAAAATTGGGATGGTCCTACTACCAAGTATGTGGAAAACTGCAAGTTTCCAAAAGACGGTTCATCACCAAAGTCCTTAAGATATGTTGGAAGCATGGTAGCTGATGTTCACCGCACATTTCTTTATGGAGGTATCTTTTTGTACCCGGCTGATAAAAAGAGTCCAAATGGGAAACTTCGTGTTCTCTACGAAGTCTTCCCAATGTCATTCTTGATGGAGCAGGCAGGAGGGCAGGCTTTCACCGGCAAGCAAAGGGCACTTGATTTGGTTCCAACAAAGTTGCACGAGAGATCTCCCATATTCCTTGGTAGCTATGATGATGTGGAGGAAATCAAGGCCCTTTATGCTGCTGATCAAAAATTGGAATGA 918 0.4488 MDHSADAQRTDLMTITRFVLNEQSKQPEARGDFTILLSHIVLGCKFVCSAVSKGEEQKKLDVLSNDVFVKALVSSGRTCILVSEEDEEATFVEPSKRGKYIIFGIYLVKENREPTIEDVLQPGKNMLAAGYCMYGSSCTFVLSTGSGVNGFTLDPSLGEFILTHPDIKVPKKGKIYSVNEGNAKNWDGPTTKYVENCKFPKDGSSPKSLRYVGSMVADVHRTFLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKQRALDLVPTKLHERSPIFLGSYDDVEEIKALYAADQKLE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02940 305 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 300 IPR000146 GO:0005975|GO:0016791
Vimu3g02940 305 ProSitePatterns Fructose-1-6-bisphosphatase active site. 240 252 IPR020548 GO:0005975|GO:0042578
Vimu3g02940 305 CDD FBPase 20 298 IPR000146 GO:0005975|GO:0016791
Vimu3g02940 305 Gene3D - 102 167 - -
Vimu3g02940 305 Gene3D - 4 101 - -
Vimu3g02940 305 FunFam Fructose-1,6-bisphosphatase class 1 168 302 - -
Vimu3g02940 305 Gene3D - 168 305 - -
Vimu3g02940 305 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 169 298 IPR044015 -
Vimu3g02940 305 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 102 165 IPR033391 -
Vimu3g02940 305 PRINTS Fructose-1,6-bisphosphatase signature 59 85 IPR028343 GO:0042132
Vimu3g02940 305 PRINTS Fructose-1,6-bisphosphatase signature 176 203 IPR028343 GO:0042132
Vimu3g02940 305 PRINTS Fructose-1,6-bisphosphatase signature 274 299 IPR028343 GO:0042132
Vimu3g02940 305 SUPERFAMILY Carbohydrate phosphatase 8 298 - -
Vimu3g02940 305 PIRSF FBPtase 101 303 IPR028343 GO:0042132
Vimu3g02940 305 PIRSF FBPtase 9 103 IPR028343 GO:0042132
Vimu3g02940 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 102 299 IPR000146 GO:0005975|GO:0016791
Vimu3g02940 305 PIRSF FBPtase_SBPase 101 304 IPR000146 GO:0005975|GO:0016791
Vimu3g02940 305 PIRSF FBPtase_SBPase 9 103 IPR000146 GO:0005975|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02940 Vimu-Chr3 43455177 43459109 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g02940 FBPase_C 9.6e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02940 K03841 - gmx:100815943 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02602 8 35411961 35417345 Vimu3g02940 3 43455177 43459109 PCT