Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02938 ATGGAAGGGAATTTGCCCCAGGGAAGTATAATTCAAGGTGGGACGTCTTTCGGTGGCTTTGATTTGCCGGGATCAATTCGGGTTCAGCATCAAGCACAACATCCACATGCCATGCACCAACATCAAACTCATCCGCGTCAAGGATCTTCTGTACATTCCACAGTTCATGATGTTTTCCCTCTTACAATGGGAACCCTGCAGAACTGTGACCAAACTATTTCAATGACAGAGTTTAGTAAAGAAAACAGAAGCAAAAACTCAGCGAGTGAGGAAGACGAGCCGAGCTTTACCGAGGATGGTGTTGATTGTCACCATGAAGCTAGTAGAGGGAAGAAAGGATCACCTTGGCAGCGGGTTAAGTGGACTGATAAGATGGTAAAACTTCTGATAACAGCTGTTTCTTATATTGGTGAGGATGTGACTGTTGATGGCGGTGGCAGTGGAAGAAGGAAGTTTGCAGTATTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAGAGGGGTTATCACGTTTCACCTCAGCAATGCGAGGATAAATTCAATGATCTGAATAAAAGATATAAAAAGCTTAACGATATGCTTGGGAGAGGCACTTCTTGTCAGGTTGTTGAAAATCCCGCTCTGTTGGATGTGATAGATTTTCTTTCTGATAAAGAAAAGGACGATGTTCGAAAAATATTAAGCTCAAAACACCTGTTCTATGAGGAGATGTGTTCTTACCATAATGGTAACAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTCCAGTTAGCGCTGCGAAATAGGGATGATCATGACAACGATGAAATGAGAAGGTCCCATCATGACGATCACGGCGAAGACGATCCAGATGTGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCTCATGGGGATAGTAGAGGAATATATGCACCATTAGGTGGACCTGTGAAGAAACTGAAACAAGGCCAAGGGCAAGAAGATGGTAATACTTTTGGCAATTCTCTAAATTGTCAGGACTACAACAGAAGTTCGTATCCCCATGGGCAGATGGTCCAATCTGATGTGAATCAAGGTTTACCTGAAAGCATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCACTTCAGTTAGAGGAACAAAAGCTGCAGATTCAGGTTGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTAAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTTAAGCGAAAGGAAATGAGCACTGGCTTTAAATAG 1347 0.4261 MEGNLPQGSIIQGGTSFGGFDLPGSIRVQHQAQHPHAMHQHQTHPRQGSSVHSTVHDVFPLTMGTLQNCDQTISMTEFSKENRSKNSASEEDEPSFTEDGVDCHHEASRGKKGSPWQRVKWTDKMVKLLITAVSYIGEDVTVDGGGSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLSDKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDEMRRSHHDDHGEDDPDVEIDDHDDFEENCASHGDSRGIYAPLGGPVKKLKQGQGQEDGNTFGNSLNCQDYNRSSYPHGQMVQSDVNQGLPESMRAAWLQKQWVESRSLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEMSTGFK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02938 448 MobiDBLite consensus disorder prediction 1 53 - -
Vimu3g02938 448 MobiDBLite consensus disorder prediction 83 115 - -
Vimu3g02938 448 Coils Coil 380 402 - -
Vimu3g02938 448 Coils Coil 410 442 - -
Vimu3g02938 448 MobiDBLite consensus disorder prediction 269 338 - -
Vimu3g02938 448 MobiDBLite consensus disorder prediction 78 115 - -
Vimu3g02938 448 MobiDBLite consensus disorder prediction 35 53 - -
Vimu3g02938 448 FunFam Sequence-specific DNA binding transcription factor 121 193 - -
Vimu3g02938 448 Gene3D - 121 193 - -
Vimu3g02938 448 PANTHER F16F4.11 PROTEIN-RELATED 1 445 - -
Vimu3g02938 448 MobiDBLite consensus disorder prediction 269 288 - -
Vimu3g02938 448 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02938 Vimu-Chr3 43435739 43444250 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g02938 Myb_DNA-bind_4 6.8e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02938 - - gmx:100812134 818.15