Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02936 ATGCTCGGGGACTCAGCTGTGTTGGGAGCGGGAGGTGGAAGTGGCGGCGGAGAAGGTGGCGCCTCCGCCGATGCAGTGGCCGGGGTCACTCATGACGGGGCGGTGATAGCGAGCGGAGGCGGTGGCGGAGTTGGATCAAATTCAGGAGACGACGAAAGGGGTAGAATCGAAGAGGGAGAACGTAGCTTCGGTGGTAACCGGTGGCCCCGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGCTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTATACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGTAAGCAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAAAATCACACTCCAACACCCCACTCTCCCAAACCATCACCTAAACTACCACAATCAGCACCATCAAGAGTAATTGCAGCAACATCTGCATCGTTGTCACTACCAATTGCAACAGCATCAACAACTGCTTCATCCTTGTCACTTCCAATTCCAACTACAATAACAACAGTACCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTCCCTATAACCATACCCCAGCCCATGCTCACTACCCCATCAATACATCTCTCAACTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAGCCCCACCATCTTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAAAGAAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTCATCCAGAAACAAGAGGATCTACAAAAGAAGTTCCTCGAAGCCATAGAGAAACGAGAACACGAAAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATCCTCGCACAGGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAGTAGCCGAACAACAAAACCTCGGTCAAGCATTAAACAGCATCAACCTCGTACAACAACCATCACAGCAACAACCTCAACCACCACTGCAACAATTACCACCATCCAGTGTAGCTCCGTCTCCTGTGCAACAACCATTGCCCGCGGTTGTTTCACAGCCATTAGTGTTTCCAGTGGTCTCACAAGTGACCAACATGGAGATAGTGAAAGTTGACAAGAACAACAATAATAGTAGCGAGAATTTCACGCCATCGAGTTCCTCGAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATGCAAAGTATCAGGAGAACGGACCAAAGGGTCCTCTGTGGGAGGAGATCTCATCCTCGATGAGGAAGCTCGGATACAATCGAAATGCGAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGAAGACCGGAAGATTCGAAAACGTGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGACAGAAGAGCAAGGTGGAGGGCGTGGCGGCGGCGGTGAAGCCGGAAAGCACGGTGGCGCCGCTGATGGTGCGGCCGGAACAGCAATGGCCACCTCAGGAGGAAACGATGAGGGATAGGGACATCAGAATGGAGGACGTGGAGAATGAAGAGGATGAGTACGAGGAAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGAAGAAGAAGATGACGAAGAAGATGAAGAAGGTGGTGGTGGTGGGAAATATGAGATAGTGGCGAACAAAACGAGTGGTGGTTCAGTTGCGGTATCGACAGAATAG 1965 0.4982 MLGDSAVLGAGGGSGGGEGGASADAVAGVTHDGAVIASGGGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPKPSPKLPQSAPSRVIAATSASLSLPIATASTTASSLSLPIPTTITTVPMQPILSNTTLTSTVPHITVPSTTTLPITIPQPMLTTPSIHLSTPSYPPTNPTTNTAPPSSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIQKQEDLQKKFLEAIEKREHERIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKVAEQQNLGQALNSINLVQQPSQQQPQPPLQQLPPSSVAPSPVQQPLPAVVSQPLVFPVVSQVTNMEIVKVDKNNNNSSENFTPSSSSRWPKVEVQALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRQKSKVEGVAAAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEEDEYEEEREGEGEGEGEEEEDDEEDEEGGGGGKYEIVANKTSGGSVAVSTE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02936 654 MobiDBLite consensus disorder prediction 246 299 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 397 422 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 573 654 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 599 632 - -
Vimu3g02936 654 ProSiteProfiles Myb-like domain profile. 465 523 IPR001005 -
Vimu3g02936 654 SMART sant 64 126 IPR001005 -
Vimu3g02936 654 SMART sant 463 525 IPR001005 -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 154 176 - -
Vimu3g02936 654 Pfam Myb/SANT-like DNA-binding domain 465 552 IPR044822 -
Vimu3g02936 654 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 266 290 - -
Vimu3g02936 654 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Vimu3g02936 654 Coils Coil 304 324 - -
Vimu3g02936 654 CDD GT1 66 131 - -
Vimu3g02936 654 FunFam Trihelix transcription factor GT-2 68 129 - -
Vimu3g02936 654 Gene3D - 68 129 - -
Vimu3g02936 654 Gene3D - 467 528 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 404 419 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 50 65 - -
Vimu3g02936 654 Coils Coil 590 617 - -
Vimu3g02936 654 CDD GT1 465 530 - -
Vimu3g02936 654 FunFam Trihelix transcription factor GT-2 467 528 - -
Vimu3g02936 654 MobiDBLite consensus disorder prediction 1 67 - -
Vimu3g02936 654 PANTHER FI21293P1 47 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02936 Vimu-Chr3 43419362 43422239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02936 57 583 Trihelix Transcription Factor Family AT1G76880 52.022 1.07e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g02936 Myb_DNA-bind_4 2.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02936 - - pvu:PHAVU_007G079700g 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02608 8 35590012 35593989 Vimu3g02936 3 43419362 43422239 PCT