Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02935 ATGGAAACCTCCTCTGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAACTTCCGGTGAAGAGAAGGGAAAAGAGGGTGGCTTAGAAGAAGAAGAAGAAGGTGACAAGATCAACAGCTCATATGCTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTAGCAGAACTGGGTTACCACCGAAGCGCGAAGAAATGTAAGGAGAAATTCGAGAATGTATACAAGTACCACAAAAGAACGAAAGAGAGTAGAAGCGGGAAACAGGAGGGGAAAACCTACAAGTTTTTTGATCAATTACAAGCACTTGAGAACCAATTCATAGTCTCTTACCCGTTAAAACCACAACCCACTTTCACAACAACAAACACGGTTGCATTATTACCTCCGCCAACAAGGCCTACTGATACAACAACAATCTCTTATGTCACCACCACTGTTCCCTCCACAAACCCTACACCAATATCTCCCACACCACCTCCACCACCACCACCACCTACCAATGCCACCACCACAACCACCACCACTTCACCAACAGTACAAACCAACCCTAGAAACCCTCCGCAACCCAACAACAATAACCACGACATCCCTTACTCTTTGCCTAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACCGCCTCTGATGAAGACTTGGAAGAGAAGTACAGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACAAGGCAAGTCCTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCCTGGAAGCCATAGACAAAAGGGAGAGAGAACACGTGGCACAGCAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCCAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGAACCAGAACCCCTCAACACAAACCGGTGCCAATTTCCTCCAAACACCGCCGTCACAACCACAACCACCACCTCCCCCCCAAGTATCACAAGTGAAACCACCACCGCAACCACAAACACCATTTGTGATGTTAAATAATAACAATATTGAAATTCAGAAAATGAATACTGGTCACGGTGCAGTTGCTGCTACTCCTACAACTGCTGCTACTGCTATTTGCGTTGTTGCTACCACTCCTACTTCGTTGAATTCTTTATCTTCTTCTAGGTGGCCGAAAGCTGAAGTTCATGCTTTGATAAGGCTGAGGACGAGTCTTGAAACCAAGTACCAAGAAAATGGACCAAAGGCTCCACTATGGGAGGACATATCAGCAGGAATGCTGAGGCTCGGGTACAACAGGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCACAGGCGAGAGAATAGTAAGACATGTCCCTATTTTCACGAACTGGACGCCTTATACAAAGAAAAGAGCAAAACTCAGAACCCCTTTGGCGTTTCATTCCTGAACATGAAGCCACACGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAGTGGAGACCTCCCTCGCAATACGAGCAAGGTGGAGTGAAGGAGAACAGTGAAAGTGAATACGAAAGAAAAGAGAGAGAGGAGGAAGAAGAAGATGATGATGATGATGAAGAAGTAGAAGAGAATGAGAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGGAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACAGTTGAATGA 1884 0.4618 METSSGEAVAAHDGGEVIMMDATSGEEKGKEGGLEEEEEGDKINSSYAGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKQEGKTYKFFDQLQALENQFIVSYPLKPQPTFTTTNTVALLPPPTRPTDTTTISYVTTTVPSTNPTPISPTPPPPPPPPTNATTTTTTTSPTVQTNPRNPPQPNNNNHDIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQNQNPSTQTGANFLQTPPSQPQPPPPPQVSQVKPPPQPQTPFVMLNNNNIEIQKMNTGHGAVAATPTTAATAICVVATTPTSLNSLSSSRWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKHRRENSKTCPYFHELDALYKEKSKTQNPFGVSFLNMKPHEMMEPLMVQPEQQWRPPSQYEQGGVKENSESEYERKEREEEEEDDDDDEEVEENENEEGDLESVEDEGGSRYEIATNKLSSVDTVE 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02935 627 ProSiteProfiles Myb-like domain profile. 44 108 IPR001005 -
Vimu3g02935 627 Pfam Myb/SANT-like DNA-binding domain 433 520 IPR044822 -
Vimu3g02935 627 Pfam Myb/SANT-like DNA-binding domain 50 136 IPR044822 -
Vimu3g02935 627 PANTHER FI21293P1 25 580 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 345 360 - -
Vimu3g02935 627 Coils Coil 567 608 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 177 260 - -
Vimu3g02935 627 Gene3D - 435 496 - -
Vimu3g02935 627 Gene3D - 52 113 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 345 384 - -
Vimu3g02935 627 FunFam Trihelix transcription factor GT-2 52 113 - -
Vimu3g02935 627 ProSiteProfiles Myb-like domain profile. 427 491 IPR001005 -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 185 202 - -
Vimu3g02935 627 CDD GT1 50 115 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 23 44 - -
Vimu3g02935 627 FunFam Trihelix transcription factor GT-2 435 496 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 1 48 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 577 605 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 553 567 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 552 627 - -
Vimu3g02935 627 SMART sant 431 493 IPR001005 -
Vimu3g02935 627 SMART sant 48 110 IPR001005 -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 203 251 - -
Vimu3g02935 627 CDD GT1 433 498 - -
Vimu3g02935 627 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02935 Vimu-Chr3 43400516 43403230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02935 48 622 Trihelix Transcription Factor Family AT1G76890 43.543 6.75e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g02935 Myb_DNA-bind_4 7.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02935 - - gmx:100799041 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02612 8 35734067 35735572 Vimu3g02935 3 43400516 43403230 PCT