Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02933 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTGGGAAGCCTATCTAGGAGGAGCTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGAAAGTCCCGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCCCCTGAGCTCCTTCGCGATGTTATCAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGCTCGTAAGCATGTCGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATCACTTTCCCTGTTGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCATCTCTTCCTCTGCCTCAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACCAGAAGAACAACTTGTACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAACCACCTTACAACAATGCTATGCTGTCCCCACCTGGGCGAAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGCCCAGGTGACGTATGAGTTGAATGTTCTTGGTACCAGGGGTCCGCGAAGGATGAATTGCACGATGTACTCCATTCCTGCGTCATCCCTTGAGCCTAATGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTTCTCGCCCCCTTGAGGATTCTTTCCGCAGTATATCCTTCTCAAAATCAATTGACAATTCAACCGAGTTTAGCAGCTCTAGGTTCTCAGACATTATGGGAACCGGTAATGAAGACCAAGAGGGAAAGGTGAGACCTTTAGTTCTCAAGAACAAGTCCCCGAGGTGGCATGAACAGCTGCAGTGTTGGTGTCTCAACTTCAGAGGAAGGGTCACCGTTGCCTCTGTTAAGAATTTTCAGCTGATTGCTGCCGCACCGCCAACCGCCGCCACCGCTGCACCTGTAGGATCAGGACCTTCTCTATCCCAGCCAACACAGTCTTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGGTACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1299 0.4834 MSFRSIVRDVRDGLGSLSRRSFEVRLPGHNRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVALKQPGHRNGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSRPLEDSFRSISFSKSIDNSTEFSSSRFSDIMGTGNEDQEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPPTAATAAPVGSGPSLSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02933 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Vimu3g02933 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Vimu3g02933 432 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vimu3g02933 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Vimu3g02933 432 FunFam Tubby-like F-box protein 110 432 - -
Vimu3g02933 432 FunFam Tubby-like F-box protein 48 101 - -
Vimu3g02933 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Vimu3g02933 432 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Vimu3g02933 432 Pfam Tub family 114 427 IPR000007 -
Vimu3g02933 432 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Vimu3g02933 432 CDD F-box_AtTLP-like 53 97 - -
Vimu3g02933 432 PANTHER TUBBY-RELATED 35 430 - -
Vimu3g02933 432 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Vimu3g02933 432 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02933 Vimu-Chr3 43378365 43380863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02933 1 432 TUB Transcription Factor Family AT1G76900 69.063 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu3g02933 Tub 2.8e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02933 K19600 - gmx:100810531 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02615 8 36149836 36152315 Vimu3g02933 3 43378365 43380863 PCT