Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02923 ATGGCGCATGTTCTAAGTTCTTTTAATGATGTCAAGTTTTATAGGTCGAAACGGTGTTCACCCACTCTCAGCCGCATCACTTATTGGAATCGCGCATCCCTTGCGATCAAGATGGCCTTGGTGGCAAATGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCCCTTACCTCAATTAAAGGTATAGGGAGACGATTTGCTAACATGGCGTGTAAGAAGGCCGATGTTGACATGAACAAAAGAGCTGGGGAGCTGAGTGCCGCTGAGTTGGATAACCTCATGACTGTGGTTGCCAATCCCCGGCAATTCAAGATTCCAGACTGGTTTTTAAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTAGTGTCCAATGCATTGGATATGAAATTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCATCGGGGGTTGAGACACTACTGGGGTCTTCGTGTACGTGGTCAGCATACCAAGACTACTGGTCGTAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGCTGA 570 0.4614 MAHVLSSFNDVKFYRSKRCSPTLSRITYWNRASLAIKMALVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMACKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02923 189 ProSitePatterns Ribosomal protein S13 signature. 158 171 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu3g02923 189 Gene3D 30s ribosomal protein s13, domain 2 129 179 IPR027437 -
Vimu3g02923 189 Pfam Ribosomal protein S13/S18 51 179 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu3g02923 189 ProSiteProfiles Ribosomal protein S13 family profile. 52 182 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu3g02923 189 FunFam 40S ribosomal protein S18 129 180 - -
Vimu3g02923 189 Gene3D - 38 117 - -
Vimu3g02923 189 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 37 189 - -
Vimu3g02923 189 Hamap 30S ribosomal protein S13 [rpsM]. 49 189 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu3g02923 189 SUPERFAMILY S13-like H2TH domain 50 189 IPR010979 GO:0003676
Vimu3g02923 189 FunFam 40S ribosomal protein S18 38 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02923 Vimu-Chr3 43321369 43324024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02923 38 189 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.737 1.06e-107 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02923 K02964 - qsu:112019340 297.745