Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02904 ATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTGAACGGTGGTTCTATTGCACAGAAAGTGGACTTTGCGTACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATCATAGGAGTGACAAAGGGTAAGGGTTATGAGGGTGTTGTAACTCGTTGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTAGCTTGTATTGGTGCCTGGCACCCTGCCAGAGTTTCATTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACAGGACCGAGTTGAACAAAAAGGTTTACAAGCTCGGTAAAGCTGGGGATGAGTCTCACTCTGCTCTTACCGAGTTCGATAGGTGA 405 0.4691 MKGLKQKKAHIMEIQVNGGSIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHSALTEFDR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02904 134 Gene3D - 1 33 - -
Vimu3g02904 134 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 2 134 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vimu3g02904 134 Gene3D Ribosomal protein L3, domain 3 34 102 IPR044892 -
Vimu3g02904 134 Pfam Ribosomal protein L3 1 134 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vimu3g02904 134 SUPERFAMILY Translation proteins 4 120 IPR009000 -
Vimu3g02904 134 FunFam 60S ribosomal protein L3 56 104 - -
Vimu3g02904 134 ProSitePatterns Ribosomal protein L3 signature. 42 65 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02904 Vimu-Chr3 43141940 43142344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02904 1 134 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 89.552 8.94e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02904 K02925 K10999 gmx:100806786 276.174