Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02902 ATGGTGGAAGGTAGAGTAATAGAGGCGCAACAGGAACGAATAATCAACTCCATCGGATCACACCTCTCTATAACGGTGGCGCACCAGAGACCTTCAGCTTCAGGTTCCGCTTCAGGCGGCCAAGAGGACCCGGAAGAGCCTTTCACCCCAAGGGATGTGCAAGTGCAAGGGGGTACTTTAGGTTCGGTTCCGACCCATGTGGTGTTACCCTCTTCCTCTGCCCAAACCAACACGGAGTGGGTCCCGGCAACTGGTTTTCCCATGGTGCCACGTTTTATGCATGCGCCTTCTCCAGGTTTCTCTTCTTCTCCCGGGCCTCCTCTTCTGGGCTCGGTTGGGCAGAAAAGAGCGCGTGAAGATGACACTGCTGCTGCCGCGAGTGGGGCTGAGGGTGGTTCGTCACAGACTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACTGCGGTTCGACCTCCTCACCTTCCCGATTTTCCGGCCACCTCACTCTCGGGCTCCGGTGATGTTCCCGCGGTGACTGGTTATTCTCCGACGGTGATGCAGGGGGCGCCGTTTCAGAGCTCCCCTGATGTGCTTAGAGACTATTGGGGTTATTCTCAGCTTCTGCGGAGCACAGGAGAGTTCCAAGGACTCGAGCAGTGGTTCTATGATTCGCAAATGGCAGCGCTTCAATCTTCTTCATCGTCGTTATTGCCGCCACCGCCTGTGTATGCACCATCCTCGGCTTCCTTTCCTCTGTTTTCAAGTCAGCAAATGGGAGTTTTCCGGCCGCCGGGGCAACAGCATCAGGGCGGAGGAGACAGTGGTAGCGGGTCAGAGTTTCCACCTTCGTCATGGTCAGATACGAGTAGTTATCCTCCTCCACCTCCACCACCCGGTTGA 1065 0.5709 MVEGRVIEAQQERIINSIGSHLSITVAHQRPSASGSASGGQEDPEEPFTPRDVQVQGGTLGSVPTHVVLPSSSAQTNTEWVPATGFPMVPRFMHAPSPGFSSSPGPPLLGSVGQKRAREDDTAAAASGAEGGSSQTASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTAVRPPHLPDFPATSLSGSGDVPAVTGYSPTVMQGAPFQSSPDVLRDYWGYSQLLRSTGEFQGLEQWFYDSQMAALQSSSSSLLPPPPVYAPSSASFPLFSSQQMGVFRPPGQQHQGGGDSGSGSEFPPSSWSDTSSYPPPPPPPG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02902 354 CDD AP2 156 207 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 MobiDBLite consensus disorder prediction 28 61 - -
Vimu3g02902 354 MobiDBLite consensus disorder prediction 309 341 - -
Vimu3g02902 354 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Vimu3g02902 354 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 MobiDBLite consensus disorder prediction 97 153 - -
Vimu3g02902 354 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Vimu3g02902 354 PANTHER DNA-BINDING DOMAIN 122 245 IPR044808 GO:0003700|GO:0009873
Vimu3g02902 354 FunFam Ethylene-responsive transcription factor 2 147 206 - -
Vimu3g02902 354 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Vimu3g02902 354 MobiDBLite consensus disorder prediction 309 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02902 Vimu-Chr3 43113169 43114334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02902 127 223 AP2-EREBP Transcription Factor Family AT2G33710 67.010 4.02e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g02902 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02902 - - aprc:113873061 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02672 8 37350451 37352382 Vimu3g02902 3 43113169 43114334 PCT